Shewanella frigidimarina: Sfri_2996
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Entry
Sfri_2996 CDS
T00395
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sfr
Shewanella frigidimarina
Pathway
sfr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sfri_2996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfr03021
]
Sfri_2996
Transcription machinery [BR:
sfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sfri_2996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF3391
Motif
Other DBs
NCBI-ProteinID:
ABI72835
UniProt:
Q07YS9
LinkDB
All DBs
Position
3595767..3597611
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AA seq
614 aa
AA seq
DB search
MISMDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFE
EAPDADDMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEI
VIAKRIEEGINTVQSSVSEYPQAIAMILEQFDKYEAEELRLSDIISGFINPDDDDVAPTA
TNVGSELADSKNDDDDDDDDDDDEEEEEGNKGPDPEEAKEKFTQLREAYEKSLGIIAEKG
RDHPEAIGSLFVIGELFKEFRLVPKQFDRLVKSMRNMMDRVRIQERLVIKLCVEHAKMPK
KNFIKAFTGNETNLDWFNKEKESTKPYAEGLRLITDDVTRCVTKLGAIEVETDLTIAGIK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPS
PEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSES
LKNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEILKSFLDE
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgatatctatggatcacactccgcagtcgcaactcaaactgttgctcgctaaaggtaaa
gagcaaggttacttaacctatgcagaagtgaacgaccacttacctgcagacatggtcgat
tccgatcagattgaagatattatccagatgataaatgacatgggtatccgcgtttttgaa
gaagcgccagatgccgatgacatgatgatgtcggaagacaacacagacgaagatgctgca
gaagaagcagcggcagctctcgcaaccgtagaaagtgagttaggccgaaccacagaccct
gtccgcatgtatatgcgcgaaatgggcacggtagagctacttactcgcgaaggcgaaatt
gttattgctaaacgtatcgaagaaggtatcaacactgtacagagttctgtcagtgaatac
cctcaagcgatcgcaatgatcttagagcaattcgataagtatgaagctgaagaattgcgc
ttgtctgatattatctctggatttatcaatcctgacgacgatgacgtcgcaccaacagcc
accaacgttggttcagaattagcagactctaaaaacgatgatgacgatgatgacgacgat
gatgacgatgaggaagaggaagaaggcaacaaaggaccagatcctgaagaagccaaagaa
aaattcactcaactcagagaagcctacgaaaaaagtttaggaattattgccgaaaaaggc
cgtgatcaccctgaagcgattggctcattatttgttattggcgaattattcaaagaattc
cgtttagtacctaaacagtttgaccgtttagtgaaaagcatgcgcaacatgatggaccgc
gtacgaattcaagaacgtctagtcattaagctttgtgttgaacacgctaagatgccaaag
aaaaactttattaaggctttcactggcaacgaaacaaacttagattggtttaacaaagaa
aaagaaagcactaagccttacgctgaaggtttacgcttgatcaccgatgacgtaacgcgt
tgtgtgaccaaacttggtgctattgaagttgaaacagatttaaccatcgcaggcattaaa
gacattaaccgtcgtatgtctatcggtgaagcgaaagctcgtcgagcgaaaaaagaaatg
gttgaagctaacttacgtttggttatttctattgccaaaaagtacaccaaccgtggttta
cagttcttggatttaatccaagaaggtaacattggtttgatgaaagcagtagataagttt
gaataccgccgtggttacaaattctcgacttatgcaacgtggtggatccgtcaggcaatc
actcgttcaatcgccgaccaagcacgtacgatccgtattccagtacacatgatcgaaacg
attaacaagttgaaccgtatttctcgtcaaatgcttcaagaaatgggccgtgagccgtct
cctgaagaattagcagaacgtatgatgatgcctgaagataaaattcgtaaggtactgaaa
atcgctaaagagccaatctcaatggaaaccccaatcggtgacgatgaagattcgcattta
ggtgattttatcgaggatactaccctcgagctaccacttgactcagcaactagcgaaagt
ctaaagaacgccacacacgaagtcttagctggcctaacagcccgcgaagcaaaagtactg
cgtatgcgttttggtatcgacatgaatactgaccacacgttagaagaagtgggtaagcaa
tttgatgtaacacgtgaacgtattcgtcaaattgaagccaaagcgttacgtaaattacgt
cacccttctcgctcagaaatcttaaagtcgttcttagacgagtaa
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