Shewanella frigidimarina: Sfri_3038
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Entry
Sfri_3038 CDS
T00395
Name
(GenBank) Deoxyribodipyrimidine photo-lyase type I
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
sfr
Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_3038
Enzymes [BR:
sfr01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
Sfri_3038
DNA repair and recombination proteins [BR:
sfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Sfri_3038
Prokaryotic type
Sfri_3038
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
ABI72876
UniProt:
Q07YN8
LinkDB
All DBs
Position
complement(3645027..3646460)
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AA seq
477 aa
AA seq
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MTSMNSLMWFRQDLRVADNPALVAACEFASSNRGHVRAVYFVTPAQWAQHDVAPIQIDFI
QRHVNLLAQALAVLGIHLDVLHAQDFDEVQTLLAAYIAQHDIAAVYAANEPEINERRRDR
ALIDSGVPLTLIDQDCVLAAGQVKNLAGDMYKVFSPFAKKWKSIAGQRAIVPVAVPAPIA
AVLATPNEVVFNCYKMSSEQWPAGEGAAKRILDQFLANQVADYQAERDFPALEGTSRLSP
FLAIGVISSRQCVAAILARYPQALVEDTCPAKTWLNELIWREFYRHLLVAFPRLSMNHNF
NELGDGIVWRNNLAEFTAWCDGQTGYPIIDAAMRQLNQTGWMHNRLRMVVASFLTKHLLV
DWRWGERYFRQKLIDGDLAANNGGWQWSAGTGCDAQPYFRVFNPMTQSSKFDPDASFIKR
YVSELSAWSLADIHQPKTINVNDLFAQRQDDRYPQPIVEHKMARLRAIEVLSALKRG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgacttctatgaatagtttgatgtggtttaggcaagatttacgggtggcagataatccg
gctttagtggcggcatgtgagtttgctagcagtaatcgtggtcatgttcgagctgtgtat
tttgtcacgccagcacaatgggcacaacatgatgttgcgccgatacaaattgattttatc
cagcgacatgtcaatttgttagcacaggcattggcggtgttaggtattcatctagatgtg
ttgcacgcacaagactttgatgaagtacaaaccctgttagccgcttatatcgcacagcat
gatattgccgctgtgtatgctgccaatgagccagaaataaatgaacgtcgtcgagaccgc
gcattaattgatagcggtgtacccctaacgttaatcgaccaagattgcgtattagcagct
ggacaagtgaaaaacttggctggtgatatgtataaggtattcagcccttttgctaaaaag
tggaaaagcattgctggccagcgtgcgattgttcccgttgcggtgcctgcgccaatcgct
gctgtactggcaacgcctaatgaagtggtatttaattgctataaaatgtctagtgagcaa
tggcctgctggagaaggggctgcaaagcgaatactggatcagtttttagcaaaccaagtt
gcagattatcaagccgaaagggattttcctgcccttgaaggaaccagtcgattatcgcct
tttttagctattggggttattagttcacgtcaatgtgtcgcagccatattagcgcgttat
ccccaagctttagtcgaagacacttgtccagcaaaaacgtggttaaatgaattaatttgg
cgtgagttttatcgccatttactggtggcgtttccacgcttatccatgaaccataacttt
aatgagttaggcgacggcattgtgtggcgtaataatcttgctgagtttaccgcctggtgt
gatggccaaacaggctatccaattattgatgctgctatgcgccaattaaatcaaaccggt
tggatgcataatcgattacgcatggtggtagctagctttttaactaaacacctattggtt
gattggcgttggggcgagcgatattttaggcaaaaactaattgatggtgacttagccgct
aataatggtggttggcaatggtcagccggaacaggctgcgatgcgcaaccttatttccgc
gtgtttaatccaatgacccaaagcagtaagtttgatccagatgcaagtttcataaagcgt
tatgtttccgagttatcagcatggtcattggccgatattcatcaacccaaaaccatcaat
gttaatgacttatttgcacaacgccaggatgatcgatacccacaacctattgtcgaacac
aagatggcacgcttgcgggcgatagaggtactaagcgcattaaagcgtggttaa
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