Shewanella frigidimarina: Sfri_3068
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Entry
Sfri_3068 CDS
T00395
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sfri_3068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfr03019
]
Sfri_3068
Enzymes [BR:
sfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sfri_3068
Messenger RNA biogenesis [BR:
sfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sfri_3068
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
UvrD-helicase
P-loop_SecA
AAA_19
Gag_p24
UTP25_NTPase-like
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABI72906
UniProt:
Q07YK8
LinkDB
All DBs
Position
3674357..3675658
Genome browser
AA seq
433 aa
AA seq
DB search
MKFESFSFAPEILRAIAECGYQSMTPIQQQAIPAIRRGEDVLASAQTGTGKTAAFALPIL
QRMCDNPKETMPSNTRTLILTPTRELAAQVADNISAYSKHLNLTVLTIYGGVKIDTQSQK
LKRGADVIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSADIKKILQAVNKKR
QNMLFSATFSSEVKKLANDMLEKPKVITVDKQNTTADTVSQVVYPVEQRRKRELISELIG
TKNWQQVLVFTATRDAADKLVKELNLDGIPSGVVHGEKAQGSRRRALREFVEGKIRVLVA
TEVAARGLDIKNLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIE
KLIGQPIRRVTVPGYEVGSREVLLKQIEKRRSFAKKQQRGDNAGAQMIAEKNMDGRRVKV
GKVSSTVKYKKIK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaatcttttagcttcgccccagaaatattacgcgcgatcgctgagtgcggt
tatcaatctatgacgccaattcaacaacaagcgattccggcaatccgtcgtggtgaagat
gtcctagcaagcgctcaaacaggcacgggtaaaacagcagcatttgcactgcctatatta
caaagaatgtgtgataacccaaaagagacgatgccgtctaacactcgtaccttaattctg
actccaactcgtgagcttgccgcacaggttgcagacaacattagcgcttacagtaagcat
cttaatttaacggtattaaccatttatggtggcgttaaaatagatacccagtcacaaaaa
cttaaacgcggtgccgacgttattgttgctacaccaggtcgtttacttgaacacattgtg
gcgtgtaacttaagtttgtcgaatgttgagtttttagtactcgatgaagccgaccgtatg
cttgatatgggctttagtgctgacattaaaaagattctccaagcagtaaacaaaaagcgt
caaaacatgttgttctctgcgaccttctcttctgaggttaaaaagctggcgaatgacatg
cttgaaaagcctaaagtgattactgttgataaacaaaacactactgccgacaccgttagc
caggtggtatatccagtagagcagcgccgtaagcgtgaattaatatctgaacttattggt
accaaaaactggcaacaggtgttggtgttcaccgcgactcgtgacgcagcagacaaattg
gtcaaagagcttaacttagatggtattccatcgggtgtggttcatggcgagaaagcacaa
ggcagccgtcgtcgtgcgttacgtgaatttgttgaaggtaaaattcgcgtattagtggcc
accgaagtcgccgctcgtggccttgatattaaaaatcttgaatacgttgttaactacgat
ttaccatttttagccgaagattacgtacaccgtattggccgtacaggtcgtgcaggtaaa
accggtgtggcaatttcgtttgtgagccgcgaagaagaacgcaccctagctgatattgaa
aagctaatcggtcagccaattcgccgagtgacggtaccgggttatgaagtcggtagccgt
gaagtactgcttaagcaaattgaaaagcgccgtagttttgctaaaaaacaacaacgtggt
gataacgctggcgcccagatgattgctgagaaaaacatggacggacgtcgtgttaaagtg
ggtaaagtcagcagcacggttaaatacaaaaagattaaataa
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