Shewanella frigidimarina: Sfri_3091
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Entry
Sfri_3091 CDS
T00395
Name
(GenBank) Uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Sfri_3091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_3091
Enzymes [BR:
sfr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Sfri_3091
DNA repair and recombination proteins [BR:
sfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Sfri_3091
Prokaryotic type
Sfri_3091
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
ABI72928
UniProt:
Q07YI6
LinkDB
All DBs
Position
complement(3697343..3698005)
Genome browser
AA seq
220 aa
AA seq
DB search
MTSHWQELFEQQQSQEYYQHLQHFIASQRADNKTVYPPDDEVFTAFDLTPLSEVKVVILG
QDPYHGPNQAHGLSFSVKKGIKPPPSLANIYKELTNDIEGFVTPEHGNLTSWAEQGVLLL
NTVLTVEQGLAHSHAKSGWETFTDNVLLRLDQQPSPIIFVCWGNHAIKKGRLITASHHHV
LNGPHPSPLSAYRGFFGCGHFSSINQLLIEQGNLAINWQV
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atgacctctcattggcaagagttgtttgagcaacaacaatctcaggaatattatcaacat
ttgcaacactttatagcctctcaaagggccgataataaaaccgtttatccgcctgatgat
gaagtgtttactgcttttgatttaacgccgctttcggaggttaaagtcgtgatactgggg
caagacccttaccatgggcccaatcaagcacatgggctttctttttcggttaaaaaaggc
attaaaccgcctccatcattagcgaatatctataaagaattaacgaatgatattgaaggc
tttgtgactcccgaacatggcaatttaacctcttgggctgagcaaggtgttttactatta
aatacggtactgacggtagagcaggggttagctcattcacatgctaaatctggctgggag
acattcactgataatgtattgctgcgattagaccaacaaccttcgccgattatatttgtg
tgttggggaaatcatgctatcaagaaaggtcgtttgattacggcatcgcatcatcatgta
ttgaacggcccgcatccatcgccattatctgcttaccgaggtttttttggttgcggtcac
ttttcaagtattaatcaattattaattgaacaaggcaacctagccataaattggcaagtt
tga
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