Shewanella frigidimarina: Sfri_3097
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Entry
Sfri_3097 CDS
T00395
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr00061
Fatty acid biosynthesis
sfr00071
Fatty acid degradation
sfr01100
Metabolic pathways
sfr01212
Fatty acid metabolism
sfr02024
Quorum sensing
sfr04146
Peroxisome
Module
sfr_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Sfri_3097
00071 Fatty acid degradation
Sfri_3097
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Sfri_3097
09145 Cellular community - prokaryotes
02024 Quorum sensing
Sfri_3097
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sfr01004
]
Sfri_3097
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfr04147
]
Sfri_3097
Enzymes [BR:
sfr01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Sfri_3097
Lipid biosynthesis proteins [BR:
sfr01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Sfri_3097
Exosome [BR:
sfr04147
]
Exosomal proteins
Exosomal proteins of breast milk
Sfri_3097
Exosomal proteins of breast cancer cells
Sfri_3097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ABI72934
UniProt:
Q07YI0
LinkDB
All DBs
Position
3703662..3705260
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AA seq
532 aa
AA seq
DB search
MAYDADSVLDLHQYTSIVDLIEKACDKYADNVAYACLGKSTTFREIEQGSRDFASYLQHS
TSLQPGDRVAIQLPNITQFVIAAYGVIRAGMVLVNTNPMYTERELIHQFNDSGAKALVVL
SDLLPTLTNVIDKTTVELVISTHAMDLIQPQPQPETPFNKVAFTSVLTEGAKHPYQAIKP
NHDDLIALQYTGGTTGLSKGAMLNHGNLLANSGQVKSRIASTMTEGHDVFVAPLPIYHIY
AFMVNLVLYFESGSCSVLIPNPRDIAGLINTMKAYPFTGFAGLNTLFVGLCHQPEFKALD
FSKMKITISGGTALTSAAANLWQQTTQCMISEGYGLSETSPVVSLNAPGHQRLGTIGKPV
LGTEVHVLDMDDNEVAIGQAGELAVRGPQVMQGYWNKPQETANVMTKDGFFKTGDIGIAS
EDGYHTIVDRKKDMIIVSGFNVYPNEVEDVLSTNELVLECAVVGVEDERSGEAVKAVIVL
KQPPADIEAVKQAINDYCRSQLTAYKVPRIIEFTEQLPKSAVGKILRRELRK
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggcttatgatgcagattcagtacttgatttacaccaatacacatccatagttgatttg
atcgaaaaagcctgtgacaagtatgctgataatgttgcatatgcatgtcttgggaaaagc
actacctttcgcgaaatagaacaaggctcgcgcgattttgccagttatttgcaacatagc
acttcattgcaaccaggcgacagagtagcgatacaattgcctaatattactcagtttgtg
attgcggcttatggggtaattcgagcaggtatggtgctagtcaataccaatccgatgtac
acggaacgtgaacttattcatcaatttaacgactcaggtgcaaaagccttagtcgtattg
tcggatttactacctacattaactaacgtgatcgacaaaacaacagtagagctggtgatt
tcgacccacgcaatggatcttatccaaccgcaacctcagcctgaaaccccttttaataaa
gtggcatttacctctgtgctcactgaaggtgctaagcatccttatcaagcgataaaacct
aaccatgatgatttaattgctctgcaatacaccggcggcacaaccggtttatcgaaaggc
gctatgctcaatcatggcaaccttttggctaattctggtcaagtaaaatcacgaattgct
agcaccatgaccgaagggcatgatgtgtttgtcgcgccattaccgatttaccatatctat
gcatttatggttaatttggtgctgtattttgaatcaggtagctgttcagtattaattccc
aatcctcgtgatattgcagggctaatcaataccatgaaagcctatccatttactggcttt
gcgggtttaaacactctatttgttggcttatgtcatcagccagaatttaaagccttagat
ttcagtaaaatgaaaataaccatttcgggtggtactgcattaacgagtgcagcagctaac
ttatggcaacaaaccacccaatgtatgatttcagaaggttatggtttgtctgaaacatct
cctgttgtcagccttaatgcaccagggcatcaacgcctcggtactattggcaaacctgta
ttgggcactgaagttcatgtactcgatatggatgataatgaagtggctatcggtcaagct
ggcgaactcgcagtgcgcggtccgcaagttatgcaagggtattggaataaaccacaagaa
accgctaacgtcatgacaaaagacggattctttaaaactggcgatattggcattgctagc
gaagatggttatcacaccattgttgatcgtaaaaaagacatgattattgtttctggtttt
aacgtctatcctaatgaagttgaagacgtactttcaactaatgagttagttttagagtgt
gctgtcgtcggggttgaagatgaacgatctggcgaagcagtaaaagccgtgattgtatta
aaacagccgccagcggatatcgaggcagtcaaacaggcgattaatgattactgccgcagc
caactgactgcgtataaagtgccacgcattattgagtttactgaacagttaccgaaaagt
gctgtagggaaaattttgcgtcgagaactacgtaaataa
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