Shewanella frigidimarina: Sfri_3213
Help
Entry
Sfri_3213 CDS
T00395
Name
(GenBank) ABC transporter related
KO
K16013
ATP-binding cassette, subfamily C, bacterial CydD
Organism
sfr
Shewanella frigidimarina
Pathway
sfr02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Sfri_3213
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sfr02000
]
Sfri_3213
Transporters [BR:
sfr02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
Sfri_3213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_21
RsgA_GTPase
ABC_ATPase
AAA_16
AAA_22
AAA_29
AAA_23
nSTAND1
MMR_HSR1
Dynamin_N
RVT_thumb
AAA_28
CHDNT
Motif
Other DBs
NCBI-ProteinID:
ABI73049
UniProt:
Q07Y65
LinkDB
All DBs
Position
complement(3847254..3849044)
Genome browser
AA seq
596 aa
AA seq
DB search
MDKSLEKSLAKWLKSQQSSCGIFLKLSVLCGVLNGIAIVAQAYFIAQILQGVIIDNLVPA
ALSLQFFALIGLLFVRALLAQVRERISFEAGKRLRTDIRQAVLNKLVALGPVFIKGKPAG
AWATLVFEQVEDLHDFYAKYLPQMMLAGFIPLLILACVFPLNWAAGIILMTTAPLIPLFM
ILVGMGAADANRKNMQALSRLSGHFMDRLKGLQTLKLFNRGEAELVNIEHASEDFRARTM
SVLRLAFLSSAVLEFFAAVSIAVLAVYFGFSYLGHLDFGHYGVQVSLFTGMFVLILAPEF
YQPLRDLGTHYHAKAQAIGAAEALVELLDYQVNTPAKIHSTSLNMAFTAESINIQAIGVE
VFSLDGQRLAGPISFTLPAGEHWAIVGPSGAGKTSLLNALLGFLPYQGSLLINGQELSQL
NVAQWRQHLAWLGQDPQLFHGTVRENVALANPQLNDAQIMTLLEQADISEFVKQQPLGLD
LVISDQSAGVSVGQAQRFALARALAQPAKLFLLDEPTASLDAQSEQSVLTSLYRAMQSTT
ALTVTHKLDDLHNMNYILVMDNGMVVQHGHVNDLRQADGLLAQMLNQQQNLQQEVS
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggacaagtcgttagaaaagtcattagccaaatggcttaaaagccaacaatcttcttgt
ggtattttcctcaaactatcggtgttatgtggtgtgctcaatggcatcgccatcgtggcg
caggcctattttattgcccagattttacagggtgtcattattgataaccttgttcccgca
gcattaagccttcaattttttgcccttattggtttgttatttgtccgagccttattggcg
caagtacgtgaacggataagctttgaggcgggcaaacgtttacgcaccgatatacgccaa
gcggtactcaataaattagtcgcattagggccggtatttattaaaggcaaacctgcaggg
gcatgggcaaccttagtctttgagcaagttgaagatttgcatgacttttatgctaaatac
ctaccgcagatgatgttggcggggtttattcctttactgatattagcctgtgtatttccg
cttaattgggccgctgggatcattttaatgacaacggcaccattgattccgttatttatg
attttagtgggtatgggcgccgcagatgctaatcgtaaaaatatgcaggcgttgtcgcgt
ttaagcggccactttatggatcgcctaaaaggcctgcaaacgttaaagttgtttaatcgc
ggcgaagcagagttagtgaatattgaacatgcttcagaagattttcgtgcccggacgatg
tcggtattacgcttagcctttcttagctccgcggtattagagttttttgccgcggtatcg
attgccgtattggcggtgtactttggctttagttacttaggtcatttagattttggtcac
tatggcgtacaggtaagtttgtttaccggcatgtttgtgttgattttagcgccagaattt
taccaacccctgcgagacttaggcactcattaccacgccaaagctcaagcaattggtgct
gcagaagcgctggttgagctgcttgattatcaagttaatacacccgctaaaatccattca
acatcattaaatatggcgtttacagccgaaagtataaacattcaagcgattggggttgaa
gtgtttagcttagatggacagcgtttagctgggcctatttcatttacattacccgctggt
gagcattgggctattgtgggcccgagtggcgcgggtaaaaccagtttactgaatgcgttg
ctaggttttttaccttatcagggatcgttgctcattaatggtcaggaattgtcacaactt
aatgtggcccagtggcgtcaacatttggcttggttaggacaagatccgcaattgtttcat
ggcacggtgcgagaaaatgtcgcgttggccaatccgcaattaaacgatgcgcagattatg
acgttgctagaacaagctgatatcagtgagtttgtaaaacaacaaccattaggcctcgat
ttagtgataagcgaccaaagtgcaggtgtgtcagtgggccaggcacaacgttttgcttta
gcacgtgcattggctcaacccgcaaaattgtttttattagatgaacctaccgctagctta
gatgcccaaagcgagcaatcagtgctgacttcgttgtaccgtgcgatgcagtcgacaaca
gcattaactgttacccataaattagatgatctacacaacatgaattacatattggtgatg
gataacggaatggtggtacaacacggtcatgtaaatgatttacggcaggctgatggatta
ttagcacaaatgctcaatcaacaacagaatctacaacaggaggtgagctga
DBGET
integrated database retrieval system
