Shewanella frigidimarina: Sfri_3254
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Entry
Sfri_3254 CDS
T00395
Name
(GenBank) transcriptional regulator, NifA subfamily, Fis family
KO
K12266
anaerobic nitric oxide reductase transcription regulator
Organism
sfr
Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfr03000
]
Sfri_3254
Transcription factors [BR:
sfr03000
]
Prokaryotic type
Helix-turn-helix
Other families
Sfri_3254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
GAF
AAA_5
AAA
Mg_chelatase
AAA_2
GAF_2
MCM
IstB_IS21
AAA_19
AAA_16
AAA_7
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABI73090
UniProt:
Q07Y24
LinkDB
All DBs
Position
3893198..3894748
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AA seq
516 aa
AA seq
DB search
MALSQADLTRIALDITANLSNRDRFSRLLTTVRETLDCDAAALLSFQGHQFTPLAIDGLS
ADVLGRRFILNEHPRLEAIARAGDIVRFPSDSELADPYDGLIPNVDGDLKVHACIGLPLF
ANEQLIGALTIDALDPNKFDQFTNNDLRSFSAIAAVSLNNALLIDKLEKQANNFTIPDTK
PSGQLHEETEIIGQADNLLSLLNEVNVVAATELNVLILGETGTGKELIAKAIHQNSVRAN
KPLVYLNCAALAESVAESELFGHVKGAFTGAISHRSGKFEMADKGTLFLDEIGELALNLQ
AKLLRVLQYGDLQKVGDDRSLKVDVRIIAATNKDLKNEVLAGRFRSDLYHRLSVFPVMVP
PLRERQQDIHLLAGFFIERYRQQLHLAHLGLEPSSLQLLEQYDWPGNIRELEHAIHRAAV
LAKSQSQKDGICIIKNSHFEFAQPSSTAIHSNKNLPIKQSVTSLPQTSLRDATDQFQNQF
IQQIYSQQGSNWAATARQLQIDSGNLHRLAKRLGLK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggcattgagtcaagcagacttaacccgtatcgcacttgatattaccgctaacttatct
aatcgagaccgtttttcacgtttattaaccacggtaagagaaacgctcgattgcgatgct
gcggcgctattatcattccaaggtcatcaatttacccctttagcaattgatgggttaagt
gctgacgtacttggacggcgctttattttaaacgaacatcctaggcttgaagccattgct
cgagcaggagatattgtccgtttcccttccgatagcgagcttgcggatccttacgatggc
ttaatccccaatgtcgacggcgacttaaaagtgcatgcctgtatcggcttaccgttattc
gctaacgagcaactcattggcgcactcaccatcgatgcactcgacccaaacaaatttgat
caattcaccaataatgatttacgcagttttagtgctattgctgcggtttctttaaacaat
gcattactgatagataaactcgaaaaacaagccaacaattttacgattccggatactaaa
ccatcagggcaactgcatgaagaaactgaaatcatcggtcaagcggataaccttctatct
ctgcttaatgaagtcaatgtcgtcgcagcaacagagctcaatgtattgattttaggagag
accggtaccggtaaagaactaatagccaaagccattcaccaaaactctgtgcgagccaat
aagccgctagtatatttaaattgtgccgcgctggctgaatccgttgccgaaagcgaactc
ttcggtcatgtcaaaggggcctttacaggcgcaattagccatcgtagcggcaaatttgaa
atggccgataaaggcaccctatttttagatgaaattggcgaattagcacttaatttacaa
gctaaattgttgcgagtactgcaatacggggatttacaaaaagtcggtgatgatcgtagc
ttaaaagtggatgttcgtattattgctgcaaccaataaagatcttaaaaacgaagtatta
gccggacgatttagatctgatttatatcatcgtttaagcgtgttcccggttatggttccg
ccgctaagagaacgtcaacaagatatccatttgttagccggattctttatcgagcgctat
cggcaacaattacacttagcccatttggggttagagccttcatcactgcaattactcgag
caatatgattggcctggtaacattagagaacttgagcatgccatccatcgagctgcggta
ttagccaaatcacaaagccaaaaagacggtatatgcatcattaaaaatagtcattttgaa
tttgcacagccatcgtccactgctatacattcaaacaaaaatcttccgattaaacagtcg
gtaacatctttaccacaaacaagcttacgtgatgcaacagaccagttccaaaaccaattt
atccaacagatatatagtcaacaagggagtaattgggctgcaaccgcacgccaattgcaa
atcgactcgggtaacttacataggctagctaaacgcttaggattaaaataa
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