Shewanella frigidimarina: Sfri_3270
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Entry
Sfri_3270 CDS
T00395
Name
(GenBank) penicillin-binding protein 1B
KO
K05365
penicillin-binding protein 1B [EC:
2.4.99.28
3.4.16.4
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr00550
Peptidoglycan biosynthesis
sfr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Sfri_3270
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
sfr01003
]
Sfri_3270
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sfr01011
]
Sfri_3270
Enzymes [BR:
sfr01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.28 peptidoglycan glycosyltransferase
Sfri_3270
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
Sfri_3270
Glycosyltransferases [BR:
sfr01003
]
Polysaccharide
Bacterial polysaccharide (excluding LPS)
Sfri_3270
Peptidoglycan biosynthesis and degradation proteins [BR:
sfr01011
]
Peptidoglycan biosynthesis and degradation
Glycosyltransferase/DD-Transpeptidase (Class A PBP)
Sfri_3270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transgly
UB2H
Transpeptidase
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
ABI73106
UniProt:
Q07Y08
LinkDB
All DBs
Position
complement(3910920..3913220)
Genome browser
AA seq
766 aa
AA seq
DB search
MSKKTKKSSANTKKSGSSWWQKLWSLTWKLSIVGIAVVSFYAIYLDQIIAQKFEGQKWHL
PAQVFSRSMALYPGAAVNHPQLMAELKLLGYRKVSNPRQVGEFSASSTRIELWRRPFLHP
EGNQAEQRVMISFDSEGVSSVKRMSDKRELAVFHLEPVLLDRIITGDGEDRLFVRTPEMP
SMIIDALILVEDRSFYDHFGVNPLAIARAAVVNITAGRTVQGGSTLTQQLAKNFFLSSER
SIVRKVREAIMALIIDFRYSKDEILEAYLNEVYMGQDKARGVHGMGLASQFYFGRPIGEL
TVSQQAFLVAVIKGPSYYNPWRYPERAQERRDLVLRLLMESDKLTVAQYKAAAESPIGLR
SAKKSVHQKLPAFFAVVKQELRDRYGDSLLKQSGVKVYTTLDPMAQEAAEKAVLSTMASL
DKRAKNVQVGMVVTDKYTGGIAAMVGDKQPSYEGFNRAVEIRRPIGSLIKPFVYASALRQ
ADRFTLATPVEDKPITLKNEQGKTWSPKNVDKKFSGQVPLLNAFKDSMNVPTVNVGLAVG
VEKVAATLKKSGWEDDISPYPSMLLGAVNGSPLMVAQVYQTIADEGRYRKLSSITAVLDS
QNQALEVTRVPSSMAIDPATDYLVQYAMNQVVRNGTAKRLGAAFPGVRLAGKTGTSNDSR
DSWFAGFDERNVAAIWVGQDDNSKTGLYGSSGAMAVYQAFLHERPPLSLRMMPVNGVING
YFDRTTGVAKKGNCDNIIGLPALDASYHPVANCGESLSWWQKLVGE
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaaaaccaaaaagtcttcagccaacacaaaaaaaagtggctcatcttggtgg
caaaaactgtggtcgctcacatggaaattatcaatcgttggtatcgctgttgtgagcttt
tatgcgatttatttagaccaaattattgcgcagaaatttgaaggccaaaagtggcattta
cctgcccaggtgtttagtcgttcaatggcattatatccaggggctgcggtaaaccatccg
cagttaatggctgagcttaagttactcggttatcgtaaagtgtctaatccacgacaagtt
ggcgaattttctgcttcaagtactcgtatcgaattatggcgtcgaccatttttgcatccc
gaaggcaatcaagccgagcaacgagtgatgattagttttgactctgaaggcgttagctca
gttaagcggatgtcagataaacgggaattagcggtatttcatttagaaccggtattactt
gaccgtattattaccggcgatggcgaagaccgtttatttgtgcgaacgccagagatgcct
tcgatgatcatcgatgcacttattttggttgaagaccgcagcttttatgatcactttggg
gttaacccattggcgattgcacgtgctgccgtagtcaacattactgctggtcggacggta
caaggtggttcaaccttaacccagcagttagccaaaaacttctttttaagcagtgaacgt
tcaattgtgcgtaaagtgcgtgaagcgataatggcattgattatcgattttcgttatagc
aaagatgaaattctagaagcttatctcaatgaagtgtacatgggccaagacaaggctcgt
ggtgtgcatggtatggggttagcttcacaattctactttggtcgccctattggtgagctg
accgtgtcgcagcaagcctttttagttgcggtcattaaaggaccttcttattacaacccg
tggcgttaccctgaacgagctcaagagcgccgtgatttagtgttacgtctgctaatggaa
agcgataaattaaccgttgcccaatataaagcagcagcagagtcgccaatcggtttacgc
agcgctaaaaaatcggtacatcagaagttaccagcgttttttgctgtggttaaacaagag
ttacgcgaccgttatggtgattcgttactgaagcagtcgggcgtaaaagtgtataccacg
ctcgatcctatggcccaagaagccgcagaaaaagccgtgttgtctaccatggcatcactg
gataaacgggctaaaaacgttcaagtcggcatggttgttactgacaaatataccggcggc
attgctgcgatggtgggtgataaacaaccgagttatgaagggtttaatcgcgcggttgag
attagacgtcccattgggtcgttaatcaaaccattcgtgtatgccagtgcattacgccaa
gcagatagatttactctagccactcccgtagaggacaaaccgatcacccttaaaaatgag
caagggaaaacatggtcacctaaaaacgttgataaaaagttcagtggtcaagtgcctttg
ttaaacgcatttaaagattcaatgaacgttccaacggttaatgttggtttggctgttggc
gttgaaaaggttgctgctacattgaaaaaatcgggctgggaggatgatatatccccttat
ccatcgatgttgttgggggcggtgaatggctctccattaatggtggctcaagtttatcaa
accattgctgatgaaggccgctatcgtaagttatcatcaattaccgcggtattagacagt
caaaaccaagcgttggaagtgactcgtgttccatcgtcgatggcgatcgatccggcgacc
gattacttagttcaatatgcaatgaaccaggtagtacgtaatggtacggctaagcgttta
ggcgcagcatttcctggagttcgtttagcgggtaaaaccggcactagtaatgatagtcgt
gactcgtggtttgctggatttgatgaacgtaacgtagcggctatttgggttggtcaagac
gataacagtaaaacgggcctgtatggcagcagcggcgcaatggcagtgtatcaagccttt
ttacatgaacgtccaccgctcagtttacgtatgatgccggttaatggcgtaattaatggc
tattttgatcgtacaacgggtgtggctaagaaaggtaattgtgacaatattatcggtcta
ccagcattagacgcaagctatcatccggtagctaattgtggtgagtcattatcttggtgg
cagaagctggtgggagagtaa
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