Shewanella frigidimarina: Sfri_3380
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Entry
Sfri_3380 CDS
T00395
Name
(GenBank) Uncharacterised P-loop ATPase protein UPF0042
KO
K06958
RNase adapter protein RapZ
Organism
sfr
Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfr03019
]
Sfri_3380
Messenger RNA biogenesis [BR:
sfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sfri_3380
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PapZ_C
RapZ-like_N
AAA_16
Integrase_1
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ABI73216
UniProt:
Q07XP8
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All DBs
Position
4025278..4026141
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AA seq
287 aa
AA seq
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MKLVIVSGRSGSGKSVALRVLEDLGYYCVDNLPLPLIGTLLAQLKGSNDLVAISVDVRNI
AEQGKVLQDQLALLENDTEIISFFLNSNDKVLLKRYSETRRLHPLSKNHISLQEAIKLEG
RLLEPIAKIVDHYIDTSALNIYELSDQVRQILLGSVDKELVINFESFGFKHGMPTEADFM
FDVRFLPNPHWEIELRPFTGLDEPVQEFLGRQPLVNKFIWQIENLFETWMPHLERNNRSY
LTIAIGCTGGQHRSVYIADQLAKRFRQGSKHTVNARHRELNISDTNN
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttgtcatagtatcgggacgttcgggctcaggaaaatccgttgccctgagagta
ttagaagacctaggatattattgtgttgataatttgcctttaccacttattggcacatta
ttagcccagcttaagggtagcaatgatttggttgcgattagtgttgatgttcgtaacatt
gcagaacaaggtaaagtgcttcaagaccaattggcactacttgagaatgacactgaaatt
atcagcttctttttaaattccaatgacaaagtattgcttaaacgttacagcgaaacacgt
cgattacacccattatctaaaaatcatatttcactacaagaagcgatcaaattagaaggc
cgtttactcgaaccgatcgcaaaaattgttgatcactacatcgacacttctgcactaaat
atctacgaattaagcgaccaagttaggcaaatattattaggcagtgttgataaagagtta
gtgattaactttgaatcttttggttttaaacacggaatgccgacagaagctgactttatg
tttgatgtacgctttttacctaacccgcactgggaaattgagctgcgtccatttacgggt
ttagacgaacccgtacaagagtttttagggcgtcagccattagtgaataagtttatttgg
caaattgaaaatctatttgaaacttggatgccacatctagaacgtaataatcgcagttac
cttaccatcgcgattggttgtactggtggtcagcaccgttcggtatatattgcagatcaa
ttagctaaacggtttagacaaggtagtaaacacacggttaatgctcgccacagagagtta
aatatcagtgatactaataactaa
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