Shewanella frigidimarina: Sfri_3397
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Entry
Sfri_3397 CDS
T00395
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03420
Nucleotide excision repair
sfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sfri_3397
03430 Mismatch repair
Sfri_3397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_3397
Enzymes [BR:
sfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sfri_3397
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sfri_3397
MMR (mismatch excision repair)
Other MMR factors
Sfri_3397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABI73233
UniProt:
Q07XN1
LinkDB
All DBs
Position
complement(4044661..4046844)
Genome browser
AA seq
727 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVGAPLSNMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVVGTNMGRMWIGTFHGLAHRLLRTHYQDANLPQSFQIIDSDDQL
RLLKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLNIYKVYQES
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQERFRHILVDEFQDTNAIQYAWIRVLAGNT
ANVMIVGDDDQSIYGWRGAQIENLHRFLKDFSGATTIRLEQNYRSTANILNASNAVIANN
PDRLGKELWTEDKDGEPISVYCAFNEMDEAKFIVGRISDWHEKGGSLSECAILYRSNAQS
RVLEEAFLHKGLAYRIYGGLRFFERQEIKDAMGYMRLINNQNDDAAFERVVNTPARGIGD
RTLDIIRSTARQHELTLWQACVSLIEEKVLAGRAANAINGFMELIIAMRTDTADMLLYRM
ADDVIDRSGLRTMYEAEKGEKAQARIENLNELVTAARSFEMPEELEDMGELNAFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVEEGLFPSKMALDEGDRLDEERRLCY
VGMTRAMQKLYISYAESRRIYGREDYASPSRFINEIPEKFVEQIRIRAQVKPSVSQRFPA
KATVATKKPHGFNDTGHKVGSKVKHFKFGEGVVTSFEGSGEKGRVQVEFVDFGSKWLLVS
LAKLERC
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcatcattattagacggcctaaacgataaacagcgtgaggcagtcggcgcg
ccactttcaaatatgttggtgttagcgggtgccggcagtggtaaaacccgtgtattaacc
catcgtattgcgtggttaatgcaagttgaacaacaaagtccatattctattttggcagtc
acctttaccaacaaagccgcggcagaaatgcgtgaacgggtggaaaaggttgtgggcact
aacatgggtaggatgtggatcggtaccttccatggtttagcgcatcggttattgcgaacc
cattatcaagacgccaatttaccgcaaagtttccagattatcgattctgacgatcagtta
cgcttacttaaacgtattctaaaaagccttaatttagacgagaagcaatatcctcctcgt
caggcccaaggttatattaatggcaaaaaagaccaaggattacgtccaaagcatatcgat
gcgggcggctttccgattgaacagaatttactgaatatttataaggtttaccaagagtct
tgcgatcgtgcaggtttggtcgactttgccgaaatcttattacgagctcatgaattatgg
ctcaataagccgcatttattggcacattatcaagaacgcttccgtcatattttagtcgat
gagtttcaagatactaacgcgattcaatatgcatggatccgtgtgttagccggtaatacc
gccaatgtgatgattgtcggtgatgacgatcaatctatttacggttggcgtggcgcacaa
attgaaaacttacatcgtttcttaaaagatttttcaggcgcaaccaccattcgtttagaa
caaaattatcgttcaacagcgaatattttgaatgcgtctaacgctgtgattgccaataac
ccagatcgtttgggcaaagagttatggaccgaagataaagatggtgaacccatttcggtt
tattgcgcctttaatgaaatggatgaagccaaattcattgttggacgcattagcgactgg
catgaaaagggcggtagtttgagcgaatgtgccattttatatcgttcaaatgcgcaatcg
cgagtattagaagaagcctttttacacaaagggttagcgtatcgtatttacggtggtctg
cgcttcttcgaacgacaagaaattaaagatgctatgggctatatgcgtctgattaataac
caaaatgatgatgcagcattcgagcgtgtggtgaatacaccagctcgtggtatcggcgat
cgtactttggatattatacgctcaaccgccagacagcatgaactgactctgtggcaagct
tgcgtgagtttaatcgaagaaaaagtccttgctggtcgtgccgctaatgccatcaatggc
tttatggaactgattattgcgatgcgaactgatacggcagatatgttgctgtaccggatg
gctgatgatgtgattgatcgttcaggcttgcgtaccatgtacgaggccgaaaaaggcgag
aaagctcaagcgcgaattgaaaacttaaacgagctggttactgctgcgcgcagttttgaa
atgcctgaagaacttgaagacatgggcgaacttaatgcctttttgtctcatgcagcatta
gaagctggcgaaggtcaggctgatgcctttaccgatgccgtgcagttaatgacattgcat
tcagccaaagggcttgagttcccaatggtgtttatggctggcgttgaagaaggattattc
ccgagtaagatggcactagatgaaggcgatcgtttagatgaagagcgccgtttgtgttat
gtcggtatgacccgtgctatgcaaaaactgtacatcagttatgctgagtctcgtcgtatt
tatggccgtgaagattatgctagcccatcacggtttattaacgaaattcccgaaaagttt
gttgagcaaatccgtatacgtgctcaggttaagccgtcagttagtcagcgttttcctgcg
aaggctacggttgccactaaaaaacctcatggttttaacgacaccggtcataaagtgggt
tctaaagtgaagcactttaagtttggtgaaggtgttgtcactagttttgaaggttctggt
gaaaaaggacgtgtgcaggttgagtttgttgatttcggtagtaaatggctgttggtgtcg
ttagccaaattagagcgttgttaa
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