Shewanella frigidimarina: Sfri_3714
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Entry
Sfri_3714 CDS
T00395
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sfri_3714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfr03019
]
Sfri_3714
03009 Ribosome biogenesis [BR:
sfr03009
]
Sfri_3714
Enzymes [BR:
sfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sfri_3714
Messenger RNA biogenesis [BR:
sfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sfri_3714
Ribosome biogenesis [BR:
sfr03009
]
Prokaryotic type
rRNA helicases
Sfri_3714
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
ASFV_J13L
Motif
Other DBs
NCBI-ProteinID:
ABI73541
UniProt:
Q07WS3
LinkDB
All DBs
Position
4406509..4408413
Genome browser
AA seq
634 aa
AA seq
DB search
MSSERTFRELGLSESLLRSLDELGYENPTPIQAASIDPLMAGKDIIGQAQTGTGKTGAFA
LPLLNKIDMKINAPQILVLAPTRELAVQVAEAFGSYAKFMKGFHVLPIYGGQSMQQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLDNLKALVLDEADEMLKMGFIDDIEWVLEHKPADS
QLALFSATMPEQIKRVAAKHLSNPVNISIASSQTTVESIDQRYVQVSQHNKLEALVRVLE
VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMRMLRTIE
RATNSRISPMKVPSPESVAERRLSRLGEQIQETINGDLDFMKNAVAELCQQLEVDTDLLA
AALLQQVQQERPLQLPTITERQRDSRDERSDRGSDRGDRNSSDRPRRERSDRGERSSRPA
PNSFGDAEGLKDNPDVKMNRYVIDVGRENGVGVGNIVGAIANEANIDSRFIGQIQLFDQV
TTVDLPDGMPKDILSHLRKVRVCGRPLNIREAGDEVFADTTRGAGAPRRPRSDRARSDRP
RTDRPAGDRPASDRPASDRPASAERRPRKPRDNG
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgaaagaactttccgcgaactcggcctgtctgagtctttgttgcgttcgctt
gacgagttaggttatgaaaacccaactcctattcaagctgctagtatcgacccgcttatg
gctggtaaagatattatcggtcaagcacaaaccggtaccggtaaaacaggcgcgtttgcc
ctgcctttactaaacaaaatcgacatgaaaatcaatgctccacagattttagtgttagca
ccaacccgcgaattagcggttcaagttgccgaagcatttggtagttatgccaaattcatg
aaaggcttccacgtactaccgatttacggtggtcaaagcatgcaacaacaattaaacgcc
cttaagcgtggaccacaagtcattgttggtactcctggtcgtgtaatggatcacatgcgt
cgtggcacattaaagctagataatctaaaagccttagtattagacgaagccgatgaaatg
ctaaaaatgggcttcatcgatgatatcgaatgggtattagagcacaagcctgctgacagc
caacttgcattattctctgccactatgcctgagcaaattaagcgcgtagcagctaagcac
ttatctaatccagtgaacatcagcatagcgtctagccagacaactgttgagtctatcgac
caacgttatgtgcaagtatcacaacacaacaaactagaagcgttagtacgtgttttagaa
gttgaaaatactgaaggtattatcatcttcgttcgtacccgtaacagctgtgttgaatta
gccgaaaaattagaagcccgtggttatgcttcatctccattacatggagacatgaatcaa
caagctcgtgagcgtgctgttgagcagcttaagcgcggcaagttagacattttaatcgcg
actgacgttgcggcacgtggtcttgacgttgaacgtattggacacgtagtaaactacgat
attccttatgattcagaagcctatgttcaccgtatcggtcgtacaggtcgtgctggtcgt
actggtatggcaatcctatttgtaaccaatcgtgaaatgcgcatgttacgcactatcgaa
cgcgctacaaacagccgtatttcgccaatgaaagtgcctagccctgaatcagttgcagag
cgtcgtttatctcgtttaggcgagcaaatccaagaaaccattaacggcgacttagatttc
atgaaaaatgctgtagctgaattatgtcaacagcttgaagttgataccgatttactagct
gctgcgttgctacaacaagtacaacaagagcgtccactacagttaccaactattaccgaa
cgtcaacgtgattcacgtgacgagcgtagtgatcgtggtagcgaccgtggtgaccgcaat
agcagcgaccgtccacgtcgtgaacgcagtgaccgtggcgagcgtagtagccgtccagca
ccaaatagctttggtgatgcagaaggcttaaaagataacccagacgttaaaatgaatcgt
tatgttatcgatgtaggtcgtgaaaatggtgttggtgtaggtaacatcgttggcgctatc
gctaacgaagcaaacatcgacagccgtttcattggtcaaatccaattgtttgatcaagtc
acaacggttgatttaccagacggaatgcctaaagacatcctttcacacctaagaaaagtt
cgtgtgtgtggtcgtcctttaaacattcgtgaagcgggtgatgaagtgtttgctgacacg
actcgcggcgcaggcgctccacgtcgcccacgtagtgatcgtgctcgtagtgaccgtcca
cgtaccgaccgcccagcgggtgatcgtccggctagtgatcgtccggctagtgaccgccct
gcaagtgcagaacgtcgtccacgtaagccacgtgacaacggttaa
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