Shewanella frigidimarina: Sfri_3761
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Entry
Sfri_3761 CDS
T00395
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Sfri_3761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_3761
Enzymes [BR:
sfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sfri_3761
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Sfri_3761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
PriA_C
ResIII
Helicase_C
PriA-like_WH
Zn_ribbon_PriA
AAA_30
TrwB_AAD_bind
AAA_22
Zn_ribbon_FGT1_1
AAA_19
Thymidylate_kin
Motif
Other DBs
NCBI-ProteinID:
ABI73588
UniProt:
Q07WM6
LinkDB
All DBs
Position
4469588..4471783
Genome browser
AA seq
731 aa
AA seq
DB search
MPVFVEVALPVPLRRNFSYRVKDEQQAGLQIGLRVKVPFGPQQLIGLITAITDSCDLAPQ
QIKSVTAVLDDAPLLPDSLYKLTLWAARYYFTTQGQMLSQALPVALRKGLEAAPQAVVEY
HLSPEGRNADSSVLKRAPAQKKLYELLLANPISQDDFTTQQLSKAALKALEQKQWIERQQ
KVLSHDLSWRQQLIMNESPHKLNKQQAVAVSVLTQQQGFHCTLLEGITGSGKTEVYLTLL
ETILKQGKQALILVPEIGLTPQTINRFKRRFEVNVAVIHSGLTDNQRLEAWRQARVGEAA
IIIGTRSALFTPMAYPGLIILDEEHDSSFKQQEGVRYHARDLAVMRGHLEDIQVVLGSAT
PSLETLQNALSGRYHHLELSERAGAAQKVKQGIVDITSQPLKAGMSTSLINEMRMHLDAG
NQVLLFLNRRGFAPALLCHECGHLHECDRCDAFFTVHQGLNEICCHHCGNQYAIPRQCHQ
CGSTMLMGHGLGTEQLEQELIKLFPKYPVVRIDRDTTRRKGSLEQQLKGIYMGKYKILVG
TQMLAKGHHFPDVTLVGLLDVDGALFSADFRAPERFGQLYTQVSGRAGRADKPGKVLLQT
HQSDNPILRDLLKRGYGEFARSQLKERQQALLPPAWHMVLIRAEAHLAEDADAFLARTSE
LLPQDKDFEIIGPIPAPLDRKAGKYRRQLILQAKSRQRLQTEFERVLALIEQIPESKRCR
WSIDRDPQDLM
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgtttgttgaagtcgccttacccgtcccattacgcagaaactttagctatcgc
gtaaaagacgaacaacaagcaggattgcaaatcggtcttcgagtaaaagtcccttttggc
cctcaacaactcatcggcttaattactgctattactgacagctgtgacttagcaccgcaa
caaataaaatcggtaactgcagtactagatgatgccccattgttacccgattcgctatat
aaattaaccctctgggccgcccggtattactttacgactcaaggacaaatgctcagccaa
gcgttgcctgtcgcattgagaaaaggcctcgaagcggcgccgcaagcggtggttgaatat
catttaagccccgaagggcgcaatgctgattctagcgtattaaaacgtgctccagcacag
aaaaaactgtacgagttattgcttgcaaaccctatcagccaagatgatttcaccacccaa
caattaagcaaagcggcattaaaagcattagaacaaaaacaatggattgaacggcagcaa
aaagtacttagtcatgatttaagctggcgccaacagcttattatgaatgagtcacctcat
aaactgaacaaacagcaagccgtcgcagtttcagtgcttactcaacaacaagggtttcat
tgcaccttattagaaggcattactggctctggcaaaaccgaggtctacctcaccttgctt
gagacaattttaaaacaaggtaaacaagcactgatcctcgtgcctgaaattggcttaaca
ccgcaaaccattaatcgcttcaagcgtcgttttgaagtcaatgttgccgtgatacattcc
ggattaaccgataatcaacgcctagaagcttggcgtcaggctcgtgtcggtgaagcagca
attattatcggcactcgctcagcactctttaccccaatggcttatccagggttaattatt
cttgatgaagagcatgacagcagctttaagcagcaggaaggtgtgcgttaccacgcacgt
gacttggcggtaatgcgtgggcatcttgaagatattcaagtggtattaggctccgcaacg
ccatcattagaaaccttacaaaatgcgctatcaggccgctatcatcacttggaactgagt
gaacgcgctggtgctgcgcaaaaggttaagcaaggtattgtcgatattacctcgcaacca
ttaaaagctggcatgtcgacatcattaattaatgaaatgcgtatgcaccttgatgcgggt
aatcaggtactgctatttctaaaccgccgcggatttgctccggccttactttgtcatgaa
tgcggccatttacatgagtgcgatcgttgtgatgctttttttaccgtccatcaaggctta
aacgagatttgttgccatcactgcggcaatcaatacgctatcccgcgccaatgccatcaa
tgtggtagcaccatgctaatgggccacggtttgggtactgaacaactagaacaagaattg
attaaactgtttcccaaatacccggttgtccgcattgaccgagacaccaccagacgtaaa
ggctcccttgaacaacagctcaaagggatttacatgggtaaatataaaattttggtcggc
acccaaatgctcgccaaaggacatcactttcccgatgtcaccttagtcggtttacttgac
gtcgatggtgcattgttcagcgcagactttcgcgcaccagaacgttttgggcagctatac
actcaagtttcaggtcgtgctggccgtgcagacaaacccggtaaagtgctactgcaaacc
catcaaagtgataaccccattttacgtgatctgttaaaacgcggttatggcgagtttgct
cgcagtcagctaaaagagcgccaacaagcattattaccacccgcatggcacatggttcta
attcgtgcagaagcacatttagccgaagatgctgatgcttttctagcgcgcactagcgag
ctactaccacaagataaagactttgaaattattggcccaattccggcgccgctagatcgt
aaagcaggaaaataccgacgccaattaatactgcaagctaaaagtcgtcagcgcttgcaa
accgaattcgaacgcgtattagcactcattgaacaaatacctgaaagtaagcgatgccgt
tggagcatcgatcgagatccgcaggatttgatgtaa
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