Shewanella frigidimarina: Sfri_3906
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Entry
Sfri_3906 CDS
T00395
Name
(GenBank) DNA-binding protein Fis / transcriptional regulator, Fis family
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
sfr
Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfr03000
]
Sfri_3906
Transcription factors [BR:
sfr03000
]
Prokaryotic type
Helix-turn-helix
Other families
Sfri_3906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
PAS
PAS_9
AAA_5
Mg_chelatase
PAS_4
HTH_8
AAA
AAA_22
AAA_2
PAS_8
bpMoxR
AAA_7
PAS_3
MCM
AAA_16
GAF
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ABI73731
UniProt:
Q07W83
LinkDB
All DBs
Position
complement(4662715..4664157)
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AA seq
480 aa
AA seq
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MTDSTTTKYIGTDHFLPENTLLLNAMTEGVYGFDLAGNAVFINPAAEQMTGWKSAELIGR
NIHDCHHHSHADGSHYPQHDCPIYRTLHDAIPRQVNEDVFWRKDGSSFPVYYSSTPVYDQ
QQLVGVIAIFRDVSMQKHTEQSLRQALAQVQALSERLASENQYLLTELQGQQGASGISGN
SQPINQLIQQIHLVANTDSTVLICGENGTGKELVARNLHRLSHRKDQPMVSVNCAAFSTA
LLESELFGHEKGAFTGATARRKGRFELANNGTLFLDEIAELSLSAQSKLLRVIQEQSFER
VGSSETIKVNIRLVAATHHDLAARVEQGLFRMDLYYRLNVFPITVPPLRERREDIPQLVS
DLVASLSKKLGKKITKVSAKGLKNLQQYSWPGNVRELQNLIEREMILSQSGHLLFNTLPV
AVTTPLATSTLTMAQAEAAHIIAILNASHWRISGPSGAAAMLDMPASTLRSRMKKLAISR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgactgactctacaaccactaaatatattggcaccgatcattttctgcctgaaaatact
ttgttgcttaatgccatgacagaaggcgtgtatggttttgatttagcgggtaatgcggtg
ttcattaaccccgcagcagaacaaatgactggctggaaaagtgctgaattaattggcaga
aatattcacgactgccatcatcatagtcatgccgatggtagccattatcctcaacatgac
tgtcccatttatcgcaccttacatgatgctattcctcggcaagtgaacgaagatgtattt
tggcgtaaagatggcagcagctttccggtgtattacagctcaacccctgtatatgatcag
caacaacttgtcggtgttatcgcgatatttcgtgatgtaagtatgcaaaaacataccgag
caatcgttaagacaagcattagcacaagtgcaggccttgtcagaacggttagcatcagaa
aatcaatacttactcactgagctacaaggccaacaaggcgcgtcgggaatatcgggtaac
agccaacctatcaatcaactcattcagcagatccatttggtcgctaataccgacagtacg
gtgttaatttgcggtgaaaacggcaccggcaaagagttagttgcgcgtaacttacacagg
ctaagtcatcgtaaagaccagccgatggtgagtgttaactgcgccgcattttcgaccgca
ttgttagaaagtgagctgtttggtcatgaaaaaggcgcatttactggtgctacagcacgt
cgcaaaggccggtttgaattagccaataatggcaccttatttttagatgaaattgctgaa
ctgagtttatcggcacaatctaaattgttacgggtaattcaagagcaaagcttcgagcgc
gttggcagtagtgaaaccattaaggtcaatattcgcttagtggctgccacccatcacgat
ttagccgcgcgagtagagcaaggcttgtttcgcatggacttatattatcgcttgaatgtg
tttccaataacggtgccgccgttacgagagcgccgcgaagatattccgcaattagtcagt
gatttagtcgcatcgctgagtaaaaagcttggtaaaaaaatcactaaagtgagtgctaaa
gggttgaagaacttacagcaatactcctggcccggtaacgtacgtgagctacaaaacctg
attgagcgagaaatgattttatcgcaaagcggtcatttgctgtttaatactttacctgta
gcggttacaactccgttagctaccagcacgttaaccatggcacaagccgaagctgcgcat
attattgcgatattaaatgctagccactggcgtatttctggtccgtctggtgctgctgcg
atgttagatatgcctgcgagtaccttacgatctaggatgaaaaagttagctattagtcgc
taa
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