Shewanella frigidimarina: Sfri_3936
Help
Entry
Sfri_3936 CDS
T00395
Name
(GenBank) Three-deoxy-D-manno-octulosonic-acid transferase domain protein
KO
K02527
3-deoxy-D-manno-octulosonic-acid transferase [EC:
2.4.99.12
2.4.99.13
2.4.99.14
2.4.99.15
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr00540
Lipopolysaccharide biosynthesis
sfr01100
Metabolic pathways
Module
sfr_M00060
KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
Sfri_3936
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
sfr01005
]
Sfri_3936
Enzymes [BR:
sfr01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.12 lipid IVA 3-deoxy-D-manno-octulosonic acid transferase
Sfri_3936
2.4.99.13 (Kdo)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase
Sfri_3936
2.4.99.14 (Kdo)2-lipid IVA (2-8) 3-deoxy-D-manno-octulosonic acid transferase
Sfri_3936
2.4.99.15 (Kdo)3-lipid IVA (2-4) 3-deoxy-D-manno-octulosonic acid transferase
Sfri_3936
Lipopolysaccharide biosynthesis proteins [BR:
sfr01005
]
Lipid A
Sfri_3936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glycos_transf_N
DEXQc_Suv3
Glycos_transf_1
Sulfotransfer_3
Motif
Other DBs
NCBI-ProteinID:
ABI73761
UniProt:
Q07W53
LinkDB
All DBs
Position
complement(4696178..4697440)
Genome browser
AA seq
420 aa
AA seq
DB search
MNRIVYSLFLYLLFPLVILYLAFRAIKSVDYRSRWSERFGFAKLTKTDVLIHSVSMGETL
AAIPLIKQLMTAHPDYVFTVTTTSPTGSAEVTKAFGDTVQHCYLPFDFSYAIKRFLRQLQ
PKVCIIMETELWPNLVHFAEQQNVTLILANARLSQKSADKYAKKRRLAVPMLNKLNLITV
QTKAEAERFITLGVTSQSIHVCGSLKFDLTIDPIKEQQANTLRAKWDRVNSPIWVAGSVH
PGEFEAILSAHKQLLACFPNALLIMAPRHPEQFNLAAITITQSGLVLARRSMNDEVNSQT
QVLLGDTMGELVMLYGTADQAFVGGTLINNGGHNPLEPAAMGLPVYVGPNHWDFAEITQL
LADAGALICISSADELAQELQNKFTDSHMYQSASFAGLAVVEQNRGALLKQFTFINELIV
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgtattgtttattctttgttcctatatttgttgtttccgctggtgattctttat
ttagcatttcgtgccataaaaagtgtcgactatcgtagccgttggtctgaacgttttggt
tttgctaagttaaccaaaacggatgtgttgatccacagtgtgtcgatgggagaaacgtta
gcggcgattccgttgattaagcagctgatgactgcgcacccagattacgtatttaccgtt
actacaaccagtccaacagggtctgctgaagtgactaaagcatttggcgatacagtccag
cattgctatttaccgtttgatttttcatatgcaattaaacgttttttacgccaattacag
cccaaagtgtgcattatcatggagaccgagttgtggccaaacttagtccactttgcagag
cagcaaaacgtgactctgattttagccaatgcacgcttatcgcaaaagtccgctgataaa
tatgctaaaaagcgtcgtttggctgtgccgatgttaaacaaactcaacttgattaccgta
caaactaaagctgaagccgaacggtttattaccctgggagtgactagtcagagcatacat
gtgtgtggcagtttgaagtttgatctcactattgatcccatcaaagaacagcaagccaac
acgcttcgagccaagtgggatcgggttaattcacctatttgggttgcagggagtgttcac
cccggcgagtttgaggccattttgagtgctcataaacagctattagcttgtttcccgaat
gcattattgattatggcgcctcgacatcctgagcaatttaatttagccgctattaccatt
acccaatctggattggtgttagcgagacgtagtatgaatgatgaggttaatagccagact
caggtattacttggcgacactatgggggagctagtgatgctatacggtacagcggatcag
gcatttgttggtgggacattgattaataatggtggtcataatccgctagagcctgctgct
atggggctacctgtgtatgttggccccaaccattgggattttgctgaaattacccaatta
cttgccgatgccggcgcattgatctgtattagctctgcggatgaattggcgcaagaatta
caaaataagtttaccgatagccatatgtatcaatctgcgtcctttgctggattagctgta
gttgagcaaaatcggggcgcgcttttaaagcagtttaccttcattaatgaactcatcgtg
taa
DBGET
integrated database retrieval system
