Shewanella frigidimarina: Sfri_3943
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Entry
Sfri_3943 CDS
T00395
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03030
DNA replication
sfr03410
Base excision repair
sfr03420
Nucleotide excision repair
sfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sfri_3943
03410 Base excision repair
Sfri_3943
03420 Nucleotide excision repair
Sfri_3943
03440 Homologous recombination
Sfri_3943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfr03032
]
Sfri_3943
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_3943
Enzymes [BR:
sfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sfri_3943
DNA replication proteins [BR:
sfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sfri_3943
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Sfri_3943
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sfri_3943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
WH_GTF3C1_N
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ABI73768
UniProt:
Q07W46
LinkDB
All DBs
Position
4703403..4706159
Genome browser
AA seq
918 aa
AA seq
DB search
MPTIPNNPLILVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYSPSHIAV
VFDAKGKTFRNDMYGEYKAQRPPMPDDLRNQIEPLHRIIHAMGLPLISISGVEADDVIGT
IALQASKEGRATLISTGDKDMAQLVNEHVTLINTMTDTIMGPEEVKTKYGVGPDRIIDFL
ALMGDKSDNIPGLPGVGEKTALAMLLGMGSVENILADPQSVVEVGFRGSKTMPAKIIENA
DMLKLSYELATIKTDVELAQDWHQMTVKPQDRDELIKSFGEMEFKRWLAEVLDNKQPRGT
ISQDSEEEVIVSPTIEAEYETILTMEALDKWIEKLNSAELIAIDTETTSLNYMEAELVGL
SFATEAGKAAYLPLAHDYLDAPLQIDKASALEKLRPILEGDTPQKVGQNLKYDMSILANA
GISLKGIRFDTMLESYVFNSIASRHDMDGLALKYLGHKNISFEEVAGKGAKQLTFNQVHL
DIAGPYAAEDADITLRLHQHLWPRLEKEPELASVFNELELPLIKVLSDVERQGVLIDSML
LSQQSGELAKKLDDLENKAYEIAEEKFNLASPKQLQTLFFEKLGYPIKKKTPKGAPSTAE
DVLIELALDYPLPKVILEHRSLAKLKSTYTDKLPLMVNATTGRVHTSYHQANAATGRLSS
SEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLTAFAEGK
DIHKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRNEAQKYIDTY
FARYPGVLKYMEETRAIAAELGYVSTLFGRRLYLPEINDRNAMRRQAAERAAINAPMQGT
AADIIKKAMIAIHQWINQDTQGEITLIMQVHDELVFEVDEAQAETLKTKVCDLMAQAASL
DVTLLAEAGIGDNWDEAH
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgccaacgattcccaataacccgctcatcttagttgatggttcatcttatctttatcgc
gcttattatgcgccgcctcatttaaccaattcaaaaggtgaagcaacaggcgcggtttac
ggtgttgttaacatgcttcgtagtttattaagccgttacagccctagccatatcgctgtt
gtttttgatgctaaaggcaaaactttccgcaacgatatgtacggtgaatacaaagcccag
cgcccacctatgcccgatgatctgcgtaatcaaatagaaccattacacagaatcattcac
gcaatgggtttacctttgatcagtatttctggtgtggaagccgatgatgtgatcggaacc
atcgctcttcaagccagtaaagaaggccgggcgacattaatcagtaccggcgataaagac
atggcacagctagtgaatgagcatgtcacgttaatcaataccatgacagataccattatg
ggccctgaagaggtcaaaacgaaatatggtgtcggtcccgatagaataatcgatttctta
gctctcatgggcgacaagtcagataacattccaggtttacctggggttggtgagaaaacc
gcgctggcgatgttgcttggcatgggaagtgtagaaaatattttagctgacccacaaagc
gtcgttgaagttggctttagaggctcaaaaaccatgccggctaaaatcatcgaaaacgcc
gacatgttaaagctgtcatatgaactggcgaccattaaaaccgatgtcgagttagcacaa
gactggcatcaaatgacagtcaagcctcaagaccgtgatgaactcattaaatccttcggt
gaaatggaattcaaacgttggttagcagaagtactcgataataaacaaccccgcggtacc
atcagccaagatagcgaagaagaggtcatcgtatcgccaaccattgaagctgagtatgaa
acgattctgaccatggaagcgcttgataaatggattgaaaagcttaacagcgccgaactg
atagcgattgataccgaaaccaccagtctcaactacatggaagcggaacttgttggttta
tcatttgctaccgaagcaggcaaagcagcctatttacctttagcgcatgattaccttgat
gcgccgctgcaaattgataaagccagcgcgcttgaaaaactacgtccgatccttgaaggc
gatacaccgcaaaaagtaggtcaaaacctcaagtatgatatgagtattttagccaacgca
ggtattagcctcaaaggtatacgctttgacactatgctcgaatcctatgtgtttaattca
atcgcatcgcgtcacgacatggacggtttagcgttaaaataccttggccataaaaatatt
agttttgaagaagtcgctggcaaaggcgcaaagcaactgacttttaatcaagttcatttg
gatattgctgggccatacgccgctgaagatgccgatatcaccctgcgtttacatcaacat
ctatggccaaggcttgaaaaagaaccagaactggccagtgtatttaatgagctagaatta
ccgttaattaaagtattgtctgatgtagaacgtcaaggcgtattgattgattcaatgcta
cttagccagcaaagtggtgagttagccaaaaagcttgatgacctagaaaataaagcctac
gaaattgccgaggaaaaatttaacctagcttcaccaaagcaactacaaacactatttttt
gaaaaactaggttatccaataaagaagaaaacccctaaaggtgcaccatcaacagcagaa
gatgtgttaatcgaactagctcttgattaccctttacctaaagttattcttgaacatcgt
agcctagccaaattaaagagcacttatactgacaaactgccacttatggttaatgccaca
actggcagagtgcataccagttatcaccaagcaaatgctgcaacgggtcgtttgtcatca
agtgagccaaacttacagaatattccgatccgtactgaagaaggtcgtcgtattcgccaa
gcttttattgcccctgcaggtcgtaaaattttagctgccgattactcgcaaatagaactg
cggatcatggctcatttgtctcaagatgcaggcttgctaaccgcattcgcagaaggcaaa
gatattcataaagctaccgcagcagaagtatttggggtgcactttgaagaagtcaccacc
gagcaacgtcgccgcgctaaagcggttaactttggcttaatttatggaatgtctgcgttt
ggtttagccaaacagctagatattccgcgcaatgaagcacaaaagtatatcgacacgtat
tttgctcgctatccaggtgtactcaaatacatggaagaaacccgagccatcgcagctgaa
ttaggttatgtatcgacattattcggacgtcgtttatacttgcctgaaatcaacgaccgt
aatgcaatgcgtcgtcaggcagctgaacgtgcagcgattaacgctccgatgcaaggaaca
gcagcagacatcatcaaaaaagccatgatagccattcaccagtggattaaccaagacact
caaggtgaaattaccctgattatgcaagtacacgatgaattagtgtttgaagtcgatgag
gcccaggctgaaaccctcaaaacaaaagtgtgtgacttaatggcacaagcagcatcatta
gatgtgaccttattagcagaggctggcattggcgacaattgggatgaagcccactag
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