Shewanella frigidimarina: Sfri_3997
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Entry
Sfri_3997 CDS
T00395
Name
(GenBank) sigma54 specific transcriptional regulator, Fis family
Organism
sfr
Shewanella frigidimarina
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
AAA
Mg_chelatase
HTH_30
AAA_2
HTH_28
AAA_16
MCM
HTH_7
AAA_22
nSTAND3
HTH_50
HTH_23
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ABI73822
UniProt:
Q07VZ2
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Position
4764677..4766044
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AA seq
455 aa
AA seq
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MPRPTLFYHLHRRQEGEARLLALPSCQHFNKIASSVDQPWLDQLHSNSIDVAIIELSQLS
QLEYAELTDSALMSDIEFIFLSEGKPNPNLDHLMSKSAGYHFRQPYDADAINDTLEDFAQ
DLQSQSTKLKQPLSSELDQYGLLVGSSRSMHKLYRTIRKVAVTESNVLIVGESGVGKELV
ANTIHLASNRVNQPFIAINCGALSPELVDSELFGHVKGAFTGAHRDHRGVFEQAEGGTLF
LDEVTEMPLEHQVKLLRVLENNEYRSVGSQHLKKANVRIVAATNRDPADAIDAGRFREDL
YFRLAHFPIHVPPLRDRNDDITGLAQHFLAYRNTAEKLTKTFSDDALKLIQQQKWSGNVR
ELKHAIERAYILAEDTILPSHITVTPLEPSTEPLADDVQIPAGMRLDELEKVAIFQALDK
SMGNKNDTAKQLGISVKTLYNKLSKYEEQTDSDEP
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgccacgtccaacacttttttatcatctacaccgtcgtcaagaaggtgaagcacgactc
cttgccttgccgagttgtcagcactttaataagattgctagttcagttgaccagccctgg
ttagaccaactgcacagtaactcgatagatgttgcgatcattgaattatcacagttaagc
caactagaatacgcagagttaactgacagtgcgttaatgtcggatattgagttcatcttc
ttaagcgaaggtaaaccgaatcctaacttagatcatttaatgtcaaaaagtgctggttac
cattttcgccagccttacgatgccgatgcaattaacgataccttagaagactttgcccaa
gacttgcagtcgcaatcgactaagttaaaacagcccctttcgagtgaactagaccaatac
ggtttattggttggttcatcgcggtcaatgcacaagttgtatcgtactattcgcaaagtt
gccgtcaccgaaagcaacgtacttattgtcggtgaaagcggtgtcggtaaagagcttgta
gccaacacgattcatttggccagtaaccgagtcaatcaaccgtttatcgccatcaactgt
ggcgcattaagccctgaattggtcgacagcgaactgtttggccatgtaaaaggcgctttt
accggtgctcatcgtgatcaccgcggtgtgttcgagcaagctgaaggtggtaccttattt
cttgatgaagtcaccgaaatgccattggaacatcaagtcaaattgctacgcgtactcgaa
aacaatgaatatcgttctgttggctcacaacaccttaaaaaagccaatgttcgcattgtg
gctgcaactaatcgcgatccagctgacgctattgatgctggccgttttcgcgaagattta
tactttcgtttagcgcattttcctatccacgtgccaccattacgcgatcgtaacgatgac
ataacgggtttagcccaacactttctagcctatcgaaataccgctgaaaaactcactaaa
accttttcggatgatgctcttaaacttatccaacaacagaaatggtccggaaatgtccgc
gaattaaaacacgcaatagaacgtgcatatattttggcagaagataccattctacctagc
catatcacggtgacacctctagaaccatcaacagaacctttagctgacgatgtacaaata
cctgctggcatgcgcctagacgaacttgaaaaagttgctatttttcaggcacttgataaa
tctatgggcaataaaaatgatactgccaaacagctaggcattagcgttaaaaccctttat
aacaaactcagcaagtacgaagagcaaaccgattcagacgaaccatag
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