Stenomitos frigidus: RBJ76_04155
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Entry
RBJ76_04155 CDS
T10829
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sfri Stenomitos frigidus
Pathway
sfri03410
Base excision repair
sfri03430
Mismatch repair
sfri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RBJ76_04155 (recJ)
03430 Mismatch repair
RBJ76_04155 (recJ)
03440 Homologous recombination
RBJ76_04155 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfri03400
]
RBJ76_04155 (recJ)
DNA repair and recombination proteins [BR:
sfri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RBJ76_04155 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RBJ76_04155 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBJ76_04155 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
ACOX
Motif
Other DBs
NCBI-ProteinID:
XHX79135
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Position
821378..823438
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AA seq
686 aa
AA seq
DB search
MIKQLSSHTATAVNKLPDQRWQIAIAQADQATAIAQATNLSPLLAQVLLNRGIGSPEHAQ
RFLHPETEVLTSPLDDFTDLPLSLELLINAINQREKIAICGDYDADGMTSTALLLRALRT
LGAQVDYAIPSRMSEGYGINQRIVEEFYDEGVKLILTVDNGIAAHQPIAHARELGVAVII
TDHHDLPPTLPDANAILNPKLIATTSPYRGVAGVGVAYILAIALAQSLGKTHELGNSLLE
LFTLGTIADLAPLTGVNRRWVRQGLQLLPKSKLAGVQALIQVTGLSGAKQMKPEAIGFRL
GPRINAVGRLADPQIVIELLTTDDDGVALERAMQCEQINKQRQQLCEQIEQDAIAIVEAA
INQAANGLASPFPPPTKGRVLVVVQPGWHHGVIGIVASRLVERYGVPVFIGTYEDEAQTH
IRGSARSIPEFNVFDALQFCSDLLGRFGGHRAAGGFSLEASNLEALRSRLQTFAHQGLQP
EHLKPLVVIDTQATIEQLDLSLYAQIDALHPCGIENPDPVFWSANVRVCEQKRIGKGHIK
LVVSQDDAMTGARKFTAIAWRWGDYYPLPSHLDLAYRLRTNDWNGEISLELELVGARKPG
AIAAVTFLLNDRTYSCEVLQHPAGRQLRIHNGQGKELIVQQGQKMATLNEDQREPTSVDV
CKPPYYAVVKAASQAIERVDGRLQPD
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtgatcaagcaactctcttctcataccgctaccgcagtcaacaaattacccgaccagcgc
tggcaaattgcgatcgctcaagctgatcaggcaacggcgatcgctcaggcgaccaacctt
tccccactgctggcacaggtattgttgaatcggggcatcggctccccagagcacgcgcaa
cgctttttgcatcccgaaaccgaggtccttacgtcaccgctagacgactttacggatttg
ccgcttagtttagaactgctgatcaatgccattaatcagcgcgagaaaattgcgatttgc
ggtgattacgatgcggatggcatgactagtactgccctgttgttacgggcactgcgaaca
ttgggcgcacaggtcgattacgccattcccagccgcatgagtgaagggtacggtatcaac
cagcgcattgtggaagagttctacgacgaaggcgtaaagctgattttgaccgttgataac
ggcattgcggctcatcagccgattgcccatgcccgtgaactgggtgtggcggtcatcatc
accgatcatcatgatttgccgcccacactgccagacgcaaatgcgattctcaaccccaag
ctaattgcgaccacttcaccctatcgcggtgtggcaggcgtgggcgttgcctatattctg
gcgatcgcgctggcacaaagcctgggcaaaacccacgagttaggtaactccttgctggag
ttgtttaccctcggtacgatcgccgatctggcaccgctgacgggtgtcaaccgccgctgg
gtgagacagggactacaactgttgccaaagtcgaagctggcaggtgtacaggcgcttatt
caagtgacgggtttaagcggtgccaagcagatgaagccagaggcgatcggctttcggtta
ggaccacgcattaacgctgtgggtcggctggctgatccgcaaattgtgattgagttgctg
acgacggatgatgacggtgtggcgctagagcgggcaatgcagtgcgagcagattaacaag
cagcgccagcagttgtgtgaacagattgagcaagacgcgatcgcgatcgttgaagctgcc
atcaaccaagcggcgaacggtttggctagtccctttccgccgcccacaaaaggtcgtgtg
ctggtagtcgtgcaacccggatggcatcacggtgtcattggcattgttgcctcgcgtctg
gtcgagcggtatggggtgcccgtctttattggcacctatgaagatgaggcacagacgcac
attcgcggctcggcgcgaagcattcccgaattcaacgtgtttgatgcgctccagttttgc
agtgatctgctgggcaggttcggcggacatcgcgcagcgggaggcttttccctggaggct
agcaatttggaagccttgcgatcgcgccttcaaacctttgcccatcaaggccttcagccc
gaacacctgaagcccttagtcgtcatcgatacccaggcaaccatcgagcagcttgatctc
agcctttatgcccagattgatgcgctgcatccctgcggcatcgaaaaccccgatccggtc
ttctggtcggcgaatgtacgtgtctgtgagcaaaaacgcattggcaaagggcacatcaag
ctagtggtcagccaggatgatgccatgaccggagcgcgcaagttcaccgcgatcgcgtgg
cgctggggcgactactatccgctgcccagccatctggatcttgcgtatcggctacgcacc
aatgactggaacggcgagatctccctggaactagagttagtcggtgctcgcaaaccgggc
gcgatcgccgctgtcacctttttgctgaacgatcgcacctatagctgcgaagtgcttcag
catccagcaggcaggcagcttagaatccacaacgggcaaggcaaagaactcattgtgcaa
caggggcaaaaaatggcgaccctcaacgaggatcagcgcgaaccaacctcggtagatgtg
tgtaaaccgccctattacgctgtggtgaaagccgcctcacaagcgatagagcgggttgat
ggacgactgcaaccggattag
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