Stenomitos frigidus: RBJ76_10425
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Entry
RBJ76_10425 CDS
T10829
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sfri Stenomitos frigidus
Pathway
sfri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBJ76_10425 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfri03019
]
RBJ76_10425 (recQ)
03400 DNA repair and recombination proteins [BR:
sfri03400
]
RBJ76_10425 (recQ)
Enzymes [BR:
sfri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBJ76_10425 (recQ)
Messenger RNA biogenesis [BR:
sfri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBJ76_10425 (recQ)
DNA repair and recombination proteins [BR:
sfri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RBJ76_10425 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
XHX80317
LinkDB
All DBs
Position
2222012..2224264
Genome browser
AA seq
750 aa
AA seq
DB search
MTASIPYATTQFASLEQALKHYFGYDSFRPGQRQMVEYALHDRDLLVIMPTGGGKSLCFQ
LPALLKEGVMIVVSPLIALMQDQVQALENNGIPATLLNSSISQIESQYRQAAILDRKIKL
VYVAPERLLSESFLGFLDQVKARVGISAFAIDEAHCVSEWGHDFRPEYRQLRRLRHRYQN
DDRVIPILALTATATERVRHDILGQLELHEPHIHVASFNRPNLYYEVRPKGSARQSYTEL
FQQVQRTEGAGIIYCLSRKRVDEITAKLQQDGIAALPYHAGLSDAVRKENQETFIRDDAR
VMVATVAFGMGINKPDVRFVIHYDLPRNIEGYYQESGRAGRDGEPSRCTLFYGIGDIKTV
EFLIAQKVNPETGEPLEDEQRIATQQLRRVINYAEATECRRTIQLGYFGEAFPGNCDTCD
NCCHPKPIADWTLEAQKFLSCVGRFAQKGQRFGINHTIDVLRGSKLERVLKNGHDQLSTF
GIGKDHSAEQWRLLARSLIHQRLVDETSDGYSVLQLNDLSWEVLKKQRSVMIAVDPVKAD
DAMAPSKVDAAEVEALYDRLQKLRKRLADEQAVPPYVVFPNSSLRSMANLQPQTLAQFAK
ISGVGSRKLAQYSEPFIAEIRAFRAERGLPLQTETGVMPQPPTPIAPSTRASETQLQTLA
LYQEGLEPADIAERRSFRLGTIMSHLAELLELGYPIDLDDLVPLDRQDKIMLAINTVGPD
ALGSIREHLGEMYGYDEIRLLRSRWRRETE
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgacagccagcattccctacgctacgactcagtttgcctcactcgaacaggcgctcaag
cattattttggctacgacagctttcgtccggggcagcggcagatggtggaatatgccctc
cacgatcgcgatctgctggtcatcatgcccacgggcggtggcaaatcgctttgctttcaa
ctgcctgcgctgctaaaggaaggcgtgatgatcgtcgtgtcgccactcatcgcactgatg
caagaccaggtacaggcattggaaaataacggtattcctgcgaccttgctcaacagcagc
attagtcaaattgagtcgcagtatcgtcaagcagctattctcgatcgcaaaatcaaactg
gtctatgtggctccagaacgactcctcagcgaatcgtttttgggctttctggatcaggtc
aaggcgcgagtcggcatttcggcgtttgcgatcgatgaggcgcactgcgtttcggaatgg
ggacatgactttcgcccagagtatcgtcagttgcggcgcttgcggcatcgctatcaaaac
gacgatcgtgtcattcccattctggcgctgactgccactgccactgagcgcgtccggcac
gacattctgggtcagctagagctacacgagccacatatccacgttgccagcttcaaccgc
cccaatctctattacgaagttcgacctaaaggcagtgcgcgacagtcatatacagagctg
ttccagcaagtgcagcgcacggaaggcgcgggcattatctattgcttaagtcgcaagcgc
gtggacgaaattactgccaagctgcaacaggacggtattgccgcgctaccgtaccatgct
ggactgagcgatgccgtgcgcaaagaaaaccaggagacattcattcgtgatgatgcgcgg
gtgatggttgccacagttgcctttggtatgggcattaacaaaccggatgtgcgtttcgtc
attcactacgatctgccccgcaacattgaaggctattaccaggaatcgggtcgtgctgga
cgcgatggtgaaccgtcccgttgcacactcttctatggcattggcgacattaaaaccgtt
gagtttctgattgcccagaaggttaatcctgagacaggcgaaccactcgaagacgaacag
cgcattgcgacccaacagctccgacgggtgatcaactatgccgaggcaacagaatgccgt
cgtacgattcagctgggctactttggcgaagcgtttcctggcaattgcgacacctgcgac
aactgctgccaccccaagccgatcgccgactggacgctagaggcacagaagtttctctcc
tgcgtgggtcgctttgcccaaaaaggtcagcggtttggcatcaaccacacgatcgatgtc
ctacgtggctccaaacttgaacgtgtgctcaaaaacggtcacgatcagctttcaaccttt
ggcattggcaaagaccatagcgccgagcagtggcggctgttggcgcgttcacttatccat
caacggctagtggatgaaacctcggatggctattctgttctgcaactaaacgacctgagt
tgggaagtgctgaaaaagcagcgcagtgtcatgattgcggttgatccggtcaaagcagac
gatgcaatggctccaagcaaagtcgatgcggctgaagtcgaagcgctctacgatcgcctt
caaaagctccgcaaacgactagcagacgaacaagcggtgccgccttacgtggtgtttcca
aactccagcctgcgatcgatggcaaacctccagccccagactctcgcccaatttgccaaa
atttcgggcgttggtagccgcaaactggcacagtacagtgaaccatttattgccgaaatt
cgagcgtttcgagccgagcgtggcttgccgctccaaactgaaacaggtgtgatgccccag
ccaccgacgccgatcgccccgtctacccgtgcctcagaaactcaactgcaaacgctggca
ctctatcaagaaggactggaacctgccgacattgcggaacggcgcagttttcgccttggc
accatcatgagccatctagctgaactgctggaactgggctaccccattgatctggatgac
ttagtgccgctcgatcgccaggacaaaatcatgctcgcgattaatacagttggaccggac
gcactcggcagcattcgtgaacatctgggtgaaatgtatggctacgacgaaattcggctg
ttgcgatcgcgctggcgacgcgaaacggaataa
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