KEGG   Stenomitos frigidus: RBJ76_14405
Entry
RBJ76_14405       CDS       T10829                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
sfri  Stenomitos frigidus
Pathway
sfri03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sfri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RBJ76_14405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfri03019]
    RBJ76_14405
Enzymes [BR:sfri01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     RBJ76_14405
Messenger RNA biogenesis [BR:sfri03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     RBJ76_14405
SSDB
Motif
Pfam: DEAD Helicase_C ResIII HI1480 AAA_19 AAA_22 P-loop_SecA
Other DBs
NCBI-ProteinID: XHX81075
LinkDB
Position
complement(3036485..3037825)
AA seq 446 aa
MSFSNLGLSDAILRAVTERGYTEPTPIQLQAIPAVLSGGDLLAGAQTGTGKTAGFTLPIL
HLLSEGDRPSVSSSQPKKRSPIRALILTPTRELAAQVEESVRDYGKYVRLASMTIFGGVG
MNPQVQRLKGGVDILVATPGRLLDHVQQGTVDLSRVEILVLDEADRMLDMGFIRDIRRIL
ALLPKQRQNLLFSATFSSDIKAFASSLLDRPTLIEAERRHLTADTVAQKVYPVDREQKRQ
LLTHLIKENNWFQVLVFTRTKHGADRLVKQLMDDNIPSLAIHGNKSQAARTRALAKFKDA
SLQVLVATDIAARGIDISDLPHVVNFELPNVPEDYVHRIGRTGRAGAEGEAVSLVCVDEL
KLLADIERLIKQPLPREIVPGFEPNPHAKPEPIQNGQRGQASRGKRPDRAPSRSPHAAPQ
PRAARHADGERSGARSPVSRRPSGRH
NT seq 1341 nt   +upstreamnt  +downstreamnt
atgtcgttttctaatctcggtctttccgatgccattctccgtgctgttacagagcgcggg
tataccgaacctacccccattcaactgcaagcgattccggcggtgctatctggtggtgat
ttgctagcgggtgcccaaacaggtactggcaagacggctggcttcacactgcccattttg
catcttttgtcggaaggcgatcgtccgtctgtctctagcagtcaaccgaagaagcgatcg
cccatcagagcgttgattctcactcccactcgtgaactggctgcacaggtcgaagaaagc
gtgcgcgattacggtaagtacgtgcggctcgcctcaatgacgatctttggcggcgtgggg
atgaatccgcaggtgcaacgcctcaaaggtggggtcgatattctcgtggcaaccccaggg
cgactgctcgatcacgtgcagcaaggaacggtggacctatcgcgcgttgaaatcctggtg
ctggatgaagccgatcgtatgttggatatgggctttatccgcgatattcgccgcattctt
gccctcttgcccaagcagcggcaaaacctgctgttctctgccacgttttccagcgacatt
aaggcgtttgcgtctagcctgctcgatcgcccaacgctgattgaggcagagcgccgccat
ctcactgccgataccgtcgcgcaaaaggtgtatcccgtcgatcgtgagcaaaagcgccaa
ctgttgactcatttgattaaagaaaacaactggtttcaggtcttggtctttacccgcact
aagcacggagccgatcgcctggtcaaacagttgatggacgacaacattccctcgctggca
attcatggcaacaagagtcaggcagcacgtacccgtgccctcgcaaagttcaaagacgct
agcctccaggtgttagtcgctaccgatattgcggcacgcggcattgacatcagcgatttg
ccccacgtcgttaactttgagctacccaacgtgcccgaagattatgtccatcgcattggt
cgtactggtcgcgcgggtgccgagggcgaagccgtatcgctagtctgtgtcgatgaacta
aaactgctagccgacattgaacggctcatcaagcagcccctgcccagagaaattgttccc
ggttttgagccaaatccccacgccaaaccagaacccatccaaaatggacagcgcggacaa
gcctctcgcggcaaacgtcctgatcgtgccccgtctcgatcgccccatgctgctccccaa
cctcgcgccgcacgtcacgctgatggtgaacgatcgggtgcgcgatcgcccgtctcccgt
cgccccagtggacgacattag

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