Stenomitos frigidus: RBJ76_14405
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Entry
RBJ76_14405 CDS
T10829
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sfri Stenomitos frigidus
Pathway
sfri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBJ76_14405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfri03019
]
RBJ76_14405
Enzymes [BR:
sfri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RBJ76_14405
Messenger RNA biogenesis [BR:
sfri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBJ76_14405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_19
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
XHX81075
LinkDB
All DBs
Position
complement(3036485..3037825)
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AA seq
446 aa
AA seq
DB search
MSFSNLGLSDAILRAVTERGYTEPTPIQLQAIPAVLSGGDLLAGAQTGTGKTAGFTLPIL
HLLSEGDRPSVSSSQPKKRSPIRALILTPTRELAAQVEESVRDYGKYVRLASMTIFGGVG
MNPQVQRLKGGVDILVATPGRLLDHVQQGTVDLSRVEILVLDEADRMLDMGFIRDIRRIL
ALLPKQRQNLLFSATFSSDIKAFASSLLDRPTLIEAERRHLTADTVAQKVYPVDREQKRQ
LLTHLIKENNWFQVLVFTRTKHGADRLVKQLMDDNIPSLAIHGNKSQAARTRALAKFKDA
SLQVLVATDIAARGIDISDLPHVVNFELPNVPEDYVHRIGRTGRAGAEGEAVSLVCVDEL
KLLADIERLIKQPLPREIVPGFEPNPHAKPEPIQNGQRGQASRGKRPDRAPSRSPHAAPQ
PRAARHADGERSGARSPVSRRPSGRH
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttctaatctcggtctttccgatgccattctccgtgctgttacagagcgcggg
tataccgaacctacccccattcaactgcaagcgattccggcggtgctatctggtggtgat
ttgctagcgggtgcccaaacaggtactggcaagacggctggcttcacactgcccattttg
catcttttgtcggaaggcgatcgtccgtctgtctctagcagtcaaccgaagaagcgatcg
cccatcagagcgttgattctcactcccactcgtgaactggctgcacaggtcgaagaaagc
gtgcgcgattacggtaagtacgtgcggctcgcctcaatgacgatctttggcggcgtgggg
atgaatccgcaggtgcaacgcctcaaaggtggggtcgatattctcgtggcaaccccaggg
cgactgctcgatcacgtgcagcaaggaacggtggacctatcgcgcgttgaaatcctggtg
ctggatgaagccgatcgtatgttggatatgggctttatccgcgatattcgccgcattctt
gccctcttgcccaagcagcggcaaaacctgctgttctctgccacgttttccagcgacatt
aaggcgtttgcgtctagcctgctcgatcgcccaacgctgattgaggcagagcgccgccat
ctcactgccgataccgtcgcgcaaaaggtgtatcccgtcgatcgtgagcaaaagcgccaa
ctgttgactcatttgattaaagaaaacaactggtttcaggtcttggtctttacccgcact
aagcacggagccgatcgcctggtcaaacagttgatggacgacaacattccctcgctggca
attcatggcaacaagagtcaggcagcacgtacccgtgccctcgcaaagttcaaagacgct
agcctccaggtgttagtcgctaccgatattgcggcacgcggcattgacatcagcgatttg
ccccacgtcgttaactttgagctacccaacgtgcccgaagattatgtccatcgcattggt
cgtactggtcgcgcgggtgccgagggcgaagccgtatcgctagtctgtgtcgatgaacta
aaactgctagccgacattgaacggctcatcaagcagcccctgcccagagaaattgttccc
ggttttgagccaaatccccacgccaaaccagaacccatccaaaatggacagcgcggacaa
gcctctcgcggcaaacgtcctgatcgtgccccgtctcgatcgccccatgctgctccccaa
cctcgcgccgcacgtcacgctgatggtgaacgatcgggtgcgcgatcgcccgtctcccgt
cgccccagtggacgacattag
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