Stenomitos frigidus: RBJ76_15080
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Entry
RBJ76_15080 CDS
T10829
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sfri Stenomitos frigidus
Brite
KEGG Orthology (KO) [BR:
sfri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sfri03009
]
RBJ76_15080 (rlmD)
Enzymes [BR:
sfri01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RBJ76_15080 (rlmD)
Ribosome biogenesis [BR:
sfri03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RBJ76_15080 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_11
MTS
RrnaAD
Methyltransf_15
N6_N4_Mtase
Methyltransf_12
TPMT
DOT1
Methyltransf_4
PCMT
Motif
Other DBs
NCBI-ProteinID:
XHX75769
LinkDB
All DBs
Position
complement(3184377..3185780)
Genome browser
AA seq
467 aa
AA seq
DB search
MSLTSLPSDDNLVAPAETPWQQGQVVDVTITDLSDSGDGVGRSHERVVFVPDTVTGDRVR
VRLLRVKPQYAHGKLLEVLEPSPHRIRARCIVADKCGGCQWQHVDYPYQLAAKQNQVVQA
LERIGKFSQPLVSPIVAAEADLGYRNKATYPLARSQAGQIQAGYYQKGSHHIVNLNQCPI
QDVRLNPLLAEVKQDLYDRGWGIYDEKLHRGKVRHLALRIGRRTGEMLLTLVVKDKNLSG
LEEQAAAWLARYPKLAGVSLNVNPDRTNAIFGRETVCVAGQPYLHETFAGLTFQLRPDTF
FQIHTEQAEALLQTIVDELQLQGHELLLDAYCGIGTFTLPLASRVRQAIGLEVQPEAVEQ
AKLSASLNQLENVTFIEGAVETLLPQLEAKPDIVLLDPPRRGCDAAVIEALTQLAPDRIV
YISCNPATLARDLKLLCQDNQYRLARVQPVDFFPQTPHVECVAFLVR
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
gtgtctttaacttccctgccgtctgacgataacttagttgcacccgcagaaaccccctgg
cagcaaggacaggtcgttgacgtgaccattaccgacttgagcgatagcggcgatggtgtc
ggtcgatcgcacgagcgcgtggtttttgtccccgatacggtgacgggcgatcgggtgcgc
gtacggctgctgcgcgtcaaaccccagtatgctcacggcaagctgctagaggtgctagaa
ccctcgcctcatcgcattcgtgcccgctgcatcgtggctgataagtgtggcggctgtcag
tggcagcacgtcgattatccctaccaacttgccgccaagcaaaaccaggttgtgcaggcg
ttagagcgcattggtaagtttagccagccattggtctctcccattgtggcagcagaggca
gatctgggctatcgcaacaaggcaacgtacccactggcgcgatcgcaggcgggacaaatt
caggcgggctattaccagaaaggcagtcatcacattgttaacctcaaccagtgcccgatt
caggatgtccggctgaatcccctgctggcagaggtgaagcaagatctgtacgatcgcggc
tggggcatttatgacgaaaaactccatcggggcaaagtccgtcatctggcactccgcatt
gggcgacgcacaggtgaaatgctgctcacgctggtggtgaaagataagaacctgtcaggg
ctggaggaacaggcagcggcatggctggcacgctatcccaagctggcgggtgtgtcgctg
aacgtaaaccccgatcgcaccaatgccatctttgggcgcgagaccgtttgcgttgccgga
caaccttacctgcacgaaacttttgcggggttgacctttcaactacgacccgataccttc
tttcagatccacaccgagcaggcagaagcgttactacaaacgatcgtcgatgagttgcaa
ctgcaagggcatgagctgttgctggatgcctactgtgggatcgggacgtttactctgccg
ttagcgtcacgagtccggcaggcgatcgggctagaggtgcaacccgaagccgttgagcaa
gccaaactcagcgccagcctgaaccagttggagaatgtcacgtttattgaaggagccgtg
gaaacgctgctgcctcagttggaggcaaaacctgatattgtgctgctcgacccgccccgt
cgaggctgtgatgcggcggtgattgaggctctcactcaattggcacccgatcgcattgtc
tatatcagttgcaatcctgctacgcttgcccgtgacctgaaactactctgccaggacaac
cagtatcggttagcgcgagtgcagcccgttgacttctttcctcaaacgccccatgttgag
tgcgtcgcctttttggtacggtaa
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