Stenomitos frigidus: RBJ76_17720
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Entry
RBJ76_17720 CDS
T10829
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sfri Stenomitos frigidus
Pathway
sfri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBJ76_17720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfri03019
]
RBJ76_17720
03009 Ribosome biogenesis [BR:
sfri03009
]
RBJ76_17720
Enzymes [BR:
sfri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RBJ76_17720
Messenger RNA biogenesis [BR:
sfri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBJ76_17720
Ribosome biogenesis [BR:
sfri03009
]
Prokaryotic type
rRNA helicases
RBJ76_17720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
HEM4
Motif
Other DBs
NCBI-ProteinID:
XHX76269
LinkDB
All DBs
Position
3719218..3720678
Genome browser
AA seq
486 aa
AA seq
DB search
MTLSFNSLGLSEARIRHLESMEFTVPTAIQAQAIPHLLCGRDVVGQAQTGTGKTAAFALP
ILDRIDVKLPAVQALILTPTRELAMQVGQAVRGFIDDRRLKVVTIYGGQAIDQQISRLER
GAQIVVGTPGRVLDLLSRGDLKLNQLTWMVLDEADEMLNMGFIQDVEKILSQAPIERQTA
FFSATMEPSVRKLVTKFLRSPITVTIEQPKTAPTRINQVAYMIPRGWTKARALQPILELE
DPEAALIFVRTRKAAAELTSQLQAAGHSVDEYHGDLSQSQRERLLLRFRQRQVRWVVATD
IAARGIHVDDLTHVINYDLPDSVENYVHRIGRTGRAGKEGTAISLVHSLDRRKLRDIEFH
MRQRLEIVSIPTRAQIEARQLEKLQGQIREALVGERMASFLPIVAQLSEEYEPHAIAAAA
LQMAYDQTRPTWMRSNNQDHVEESFHSGGGNSGHGGNGGGSAKPKPVKRGRSVGNSENQV
SPSLDR
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaccctttctttcaatagccttggtctttccgaagcccgcattcgccacctggaatca
atggaatttacagttccaactgctatccaggcgcaggcaatcccccatcttctttgcggg
cgcgatgttgtaggacaagctcaaacgggtactggtaaaactgctgcctttgcgctgccc
atcctcgatcgcattgatgtcaagctaccagccgtgcaggcgctgatcttgactccgacc
cgcgaattagctatgcaggttggtcaagccgtacgtggctttatcgacgatcgtcgcctc
aaagtagtcaccatctacggtgggcaggcgatcgaccagcaaatttctcgccttgaacgc
ggcgctcaaatcgttgttggtactcccggacgtgtgctagacctccttagccgtggcgac
ctgaagctgaaccagttaacctggatggtgctggatgaagcggatgagatgctcaatatg
ggcttcattcaagatgtcgaaaagattcttagtcaggcaccgatcgagcgtcaaacggcg
ttcttctccgccacgatggagccatcggtacgcaagctggtaacgaagttcttgcgttcg
cccattacggtcacgatcgaacagcccaaaacggcaccgactcgcattaatcaagtcgcc
tacatgatcccccgcggttggacgaaggcacgtgcccttcagcccattctggaactagaa
gatcccgaagcagcgctgatttttgttcgcacccgtaaggcggcggcagaacttaccagc
cagcttcaagcagcggggcatagcgttgatgaatatcatggtgacctcagccaatcgcaa
cgggaacggctcttgctccggttccgccagcgtcaagtgcgctgggtagtcgcgactgac
attgctgctcgtggtatccacgtcgatgacctgacccacgtcattaactatgacttgccc
gacagtgtagagaactatgttcaccgcattggtcgtaccggtcgcgccggcaaagaaggt
accgcgatttccctggtacattctctcgatcgccgtaagctgcgtgatatcgagttccat
atgcgtcaacggttggaaattgtctcaatcccaactcgcgctcagattgaagcccgtcaa
ctggaaaaactccagggtcaaattcgggaagcgctggtaggcgaacggatggcatccttc
ttgccgatcgtggcgcaactgtcagaagagtatgaacctcacgccattgctgccgcagcg
ttgcaaatggcgtatgaccagacccgtccgacctggatgcggtctaacaaccaggatcat
gtagaggagtcattccatagcggtggcggcaacagtggacatggtggcaatggcggcggt
tcagccaagcccaagcccgtcaaacgcggtagaagtgttggcaactctgagaatcaggta
tcgccatccctcgatcgctag
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