Stenomitos frigidus: RBJ76_23680
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Entry
RBJ76_23680 CDS
T10829
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sfri Stenomitos frigidus
Brite
KEGG Orthology (KO) [BR:
sfri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfri03032
]
RBJ76_23680
03400 DNA repair and recombination proteins [BR:
sfri03400
]
RBJ76_23680
Enzymes [BR:
sfri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RBJ76_23680
DNA replication proteins [BR:
sfri03032
]
Prokaryotic type
DNA Topoisomerases
RBJ76_23680
DNA repair and recombination proteins [BR:
sfri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RBJ76_23680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF4982
Motif
Other DBs
NCBI-ProteinID:
XHX77411
LinkDB
All DBs
Position
complement(5039153..5040277)
Genome browser
AA seq
374 aa
AA seq
DB search
MRLKAQKRSLEKHIKAVVTADPIASAEAIGLRYVTDDIPGIQRKRSGKKGFTYIDTNGDR
LRDPEEIRRIDALAIPPAYKNVWICPFANGHLQATGRDAKGRKQYRYHPLWRSIRDQSKF
TRMLVFSQSLPQIRQRLEHDLSLPGLPKEKVLAAILRLMELTRVRVGNEEYARSNQSYGL
TTLRDEHVDITGSKMQFHFRGKSGVEHEIELADKRLAKIVKRCQDIPGQELFQYRDAAGE
YQAIDSGDVNAYLRAITEQDFTAKDFRTWAGTVLAAAELADIGTFTSETGAKKNIVQAIK
TVASYLRNRPATCRKYYIHPAILNAYMDESLHQIMKEHAATIVEQSHTLKPEELAVVVML
EQQLMQELQQKVVA
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgcggcttaaagctcaaaaacgctcccttgaaaaacatatcaaagcggttgttactgcc
gacccgatcgcgtctgccgaggcgatcggcttgcgttatgtcaccgatgatataccgggg
atacagcgaaaacgctctggcaaaaaaggatttacttacattgataccaacggcgatcgt
cttcgtgatccagaggagatccgtcgcattgacgcactagcaattccacccgcctacaaa
aatgtgtggatttgtccctttgccaatggacatttgcaggcaaccgggcgagatgcaaaa
gggcgcaagcaataccgttatcatccgttgtggcgatcgatccgcgaccaaagcaaattc
actcggatgctagtgtttagccaatcgttaccgcaaattcggcaacgcttagagcatgat
ttatccctacctgggctaccaaaggaaaaagtgctagcggcaattcttcgcttaatggaa
ctgactcgcgttcgcgttggcaatgaagaatacgcccgttctaatcaatcctatggtttg
accacactgcgcgatgagcacgttgatattacaggctccaaaatgcaatttcactttcgg
ggcaagagcggcgttgaacatgagattgagctggctgataaacgcctcgctaaaattgtc
aagcgctgtcaggatattcccggtcaggagctctttcagtaccgtgatgcggctggagaa
tatcaggcgatcgactctggcgatgtcaacgcttatttgagagccattactgaacaagac
tttacagcaaaggatttccgtacgtgggctggcaccgtactagccgccgcagaactggca
gatatcggcacgtttacatccgaaacgggtgcgaaaaagaacattgtacaggcaattaaa
acggtcgcctcttacctgcgaaatcgccctgcaacctgtcggaaatactatattcatcca
gcgatattaaacgcatacatggatgagtccttgcatcagattatgaaggaacacgcggca
acgatcgttgaacagagccatacgcttaaacctgaagaattagccgttgtcgtcatgcta
gagcaacagttaatgcaggagttacagcaaaaagtagtggcttga
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