Stenomitos frigidus: RBJ76_24750
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Entry
RBJ76_24750 CDS
T10829
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfri Stenomitos frigidus
Pathway
sfri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBJ76_24750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfri03019
]
RBJ76_24750
03009 Ribosome biogenesis [BR:
sfri03009
]
RBJ76_24750
Enzymes [BR:
sfri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RBJ76_24750
Messenger RNA biogenesis [BR:
sfri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RBJ76_24750
Ribosome biogenesis [BR:
sfri03009
]
Prokaryotic type
rRNA processing factors
RBJ76_24750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
XHX77608
LinkDB
All DBs
Position
5281123..5283423
Genome browser
AA seq
766 aa
AA seq
DB search
MSKQIVIAEQHRIAAVFSEDQIQELIVATGSHQVSDVYLGIVENVLPGIDAAFVNIGDSE
RNGFIHVTDLGPLKLRRMAGSITELLAPQQKVLVQIMKEPTGNKGPRLTGNVSLPGRYLV
LMPYGKGVNLSRRIRNENERNRLRALAILVKPAGMGIVVRTEAENMPEDAIIEDLEMLQK
QWELVLQEATTTRAPALLNRDDDFIQRVLRDVYSADVNRIVVDSHTGLKRVRQQLTNWGG
GDLPRGVLIDHHRDRAPIMEYFRINAAIREALKPRTDLPSGGYVIIERTEALTVIDVNSG
SFTRSATARETVLWTNCEAATEIARQLRLRNIAGIIVVDFIDMDQRRDQLQVLEHFNKAL
RADKSRPQIAQLTELGLVELTRKRQGKNIYEIFGRACPTCGGLGHLVHLPGDSETAEGDM
VERPAAVALRESRTVDRNITGRGRGRDLVLPTVVSAPEPTWEDRSEDLDDSDDVQDLGLS
HPSYQELGGNNRRRRRRRPGDEGRSGSPSYQSAPTLKLDSANDGEPTAVPDLPFASRSDA
GRSDRPERPARGRGGRGRGGRDGVPELLLNRELVPAKDLGTTLETPYVPEAPPELSYVEE
RRGRSRRDSSRAPQEPPEVVIVEMTPAEQDIYAWMGISPLILSGQEVKNPKAAIVSVVLP
GQAPPETESEQMTLVSELEPVATPKPKQRVIETVPIARQANTDLIEVEEASDPPATVPPF
HSLQFDSVETVSVELEAVEPPDESIDADDAPVTRRRRRRSSATTSD
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacaaattgtgatcgcagagcagcatcgtattgctgccgttttttcggaagat
cagattcaagaactgattgttgcaacgggtagtcatcaagtaagtgatgtttatcttggc
atcgttgagaatgtcctaccaggtattgatgcagccttcgtaaacattggtgatagtgaa
cgcaacggatttattcatgtcaccgacttaggtccgttgaagttgcgccggatggcgggc
tccattaccgaactgttggctcctcagcaaaaagtgctggtgcagatcatgaaggagccg
acgggtaataagggcccccgtttgacaggtaacgtttcactcccggggcgttacttagtg
ctgatgccttatggcaaaggtgtaaacctttcccgccgcattcgtaatgaaaacgaacgg
aatcggttacgggcgttggcaattttggttaaacctgcaggcatgggcattgttgtccgc
actgaagcagaaaatatgcctgaggatgccattattgaagatttggaaatgctgcaaaag
cagtgggagcttgtcttgcaagaggcgaccactacccgcgcacctgccctgctaaatcgg
gatgatgactttattcagcgggtgctgcgggatgtttacagtgcggatgtcaatcggatt
gtggtggactcccatactgggctaaagcgtgtgcggcagcagttgacgaattggggcggt
ggtgatttacctcggggcgtgctgattgatcaccatcgcgatcgtgccccaattatggag
tacttccgtatcaacgctgctatccgagaagcgctcaaaccaagaactgatttgccctcc
ggtggctacgtcattattgagcgtacggaagcattaaccgtgattgatgttaactctggc
tctttcacccgctccgccaccgcccgcgaaaccgtgctttggacaaattgtgaagctgcc
actgagattgctcgccaactgcgactgcgtaacattgctggcatcattgtggtcgatttt
attgatatggatcagcgccgcgatcaactgcaagtattagagcactttaacaaggcgctg
agagctgataagtcgcgtcctcagattgctcaattgacagaacttgggttagtcgagcta
acgcgcaagcgtcaaggcaaaaacatttacgaaatttttggtcgtgcctgtcctacctgt
ggcggtttaggtcatctggtgcatctaccaggggatagcgagacggcagagggtgatatg
gtggagcgtccagcagccgtagcgctacgagaatcacgaaccgtcgatcgcaacattaca
gggcgtggacgtggacgtgatctagtgcttcctacggttgtcagtgcccccgagccaaca
tgggaagaccgtagcgaagacctggatgatagtgatgatgttcaggatctagggctgagc
catccgagctatcaagagctgggtggtaacaaccgtcgccgccgccgtcgccgtcccggt
gatgaaggacgtagcggcagtccgtcttatcaaagcgctcctaccctaaagcttgattca
gcaaacgatggtgaaccaacggctgttccagacttaccattcgctagtcgctctgatgcc
ggacgctctgatcgtccagagcgtccggctcgaggtcgcggtggtcgggggcgtggcgga
cgtgacggcgtacccgaactgctgcttaatcgagagcttgttccagcaaaagacctggga
acaacgctggagactccctatgtgccggaggcaccaccagagttaagttatgtagaggag
cgccggggtcgatcgcgtcgggattcttcacgagcgccacaagagccaccagaagtcgtt
attgtagaaatgacacccgcagaacaggatatttatgcctggatgggtatttcgccgttg
atactctctggtcaggaagtaaaaaatccgaaagcagccatcgtctcagtggtcttacca
ggacaggctcctccagaaacagaatcagagcaaatgacgctggtgtctgagttagagcca
gtagcgacacctaaacctaaacagcgggtgattgagactgttccgatcgccagacaagcg
aacacagatttgatcgaagttgaggaagcgtcagaccctccagctactgtgcctccgttt
cacagccttcaatttgatagtgtagagaccgttagtgtagaactggaggcagtagagcca
ccggatgagtcgatcgacgctgatgatgcgcctgtaacccgccgccgtcgccgccgttct
tcggcaacaacatcagattag
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