Shigella flexneri Shi06HN006 (serotype Yv): SFyv_2088
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Entry
SFyv_2088 CDS
T03315
Name
(GenBank) AMP-binding enzyme family protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sfs
Shigella flexneri Shi06HN006 (serotype Yv)
Pathway
sfs00061
Fatty acid biosynthesis
sfs00071
Fatty acid degradation
sfs01100
Metabolic pathways
sfs01212
Fatty acid metabolism
sfs02024
Quorum sensing
sfs04146
Peroxisome
Module
sfs_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sfs00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
SFyv_2088
00071 Fatty acid degradation
SFyv_2088
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SFyv_2088
09145 Cellular community - prokaryotes
02024 Quorum sensing
SFyv_2088
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sfs01004
]
SFyv_2088
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfs04147
]
SFyv_2088
Enzymes [BR:
sfs01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
SFyv_2088
Lipid biosynthesis proteins [BR:
sfs01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
SFyv_2088
Exosome [BR:
sfs04147
]
Exosomal proteins
Exosomal proteins of breast milk
SFyv_2088
Exosomal proteins of breast cancer cells
SFyv_2088
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
AIL40462
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All DBs
Position
1501483..1503087
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AA seq
534 aa
AA seq
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MFEQSVARYADQPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQY
PVALFGILRAGIIVVNVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTAVQHV
ILTRMGDQLSTAKGTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPED
LAFLQYTGGTTGVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTI
NCLLFIELGGQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSL
HLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPST
EAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGF
LRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPS
LTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagcagtcggtcgcgcgctacgccgatcagcctgcgtttgtgaatatgggggag
gtgatgaccttccgcaagctggaagaacgcagtcgcgcgtttgccgcttatttgcaacaa
gggttggggctgaagaaaggcgatcgcgttgcgttgatgatgcctaacttattgcaatat
ccggtggcgctatttggcattttgcgtgccgggataatcgtcgtaaacgttaacccgttg
tataccccgcgtgagcttgagcatcagcttaacgatagcggcgcatcggcgattgttatc
gtgtctaactttgcccacactctggaaaaagtggttgataaaaccgccgttcagcacgta
attctgacccgtatgggcgatcagctatctacggcaaaaggcacggtagtcaatttcgtt
gttaaatacatcaagcgcttggtgccgaaataccatctgccagatgccatttcatttcgt
agcgcactgcataacggctaccggatgcagtacgtcaaacccgaactggtgccggaagat
ttagccttcctgcaatacaccggcggcaccacaggtgtggcgaaaggcgcgatgctgact
caccgcaatatgctggcgaacctggaacaggtcaacgccacctatgggccgttgctgcat
ccaggtaaagaactggtagtaacggcactgccgctgtatcacatttttgccctgaccatt
aactgcctgctgtttatcgaactgggtgggcagaacctgcttatcactaacccgcgtgat
attccagggttggtaaaagagttagcgaaatatccgtttaccgctatcactggcgttaac
accttgttcaatgcgttgctgaacaataaagagttccagcagctggatttctccagtctg
catctttccgcaggcggtgggatgcctgttcagcaagtggtggcagaacgctgggtgaaa
ctgaccggacagtatctgctggaaggttatggcctgaccgagtgcgcgccgctggtgagc
gttaacccgtatgatattgattatcatagcggtagcatcggtttgccggtgccatcgacg
gaagccaaactggtggatgacgacgacaacgaagtaccaccgggtcaaccgggtgagctt
tgtgtcaaaggaccgcaggtgatgctgggttactggcagcgtccggatgctacagatgag
atcatcaaaaatggctggttacacaccggcgacatcgcggtgatggatgaagaaggattc
ctgcgcattgtcgatcgtaaaaaagacatgattttggtttccggttttaacgtttatccc
aacgagattgaagatgtcgtcatgcagcatcctggcgtacaggaagtcgcggctgttggc
gtaccttccggctccagtggtgaagcggtgaaaatcttcgtagtgaaaaaagatccatcg
cttaccgaagagtcactggtgactttttgccgccgtcagctcacgggatacaaagtaccg
aagctggtggagtttcgtgatgagttaccgaaatctaacgtcggaaaaattttgcgacga
gaattacgtgacgaagcgcgcggcaaagtggacaataaagcctga
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