Shigella flexneri Shi06HN006 (serotype Yv): SFyv_4016
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Entry
SFyv_4016 CDS
T03315
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
sfs
Shigella flexneri Shi06HN006 (serotype Yv)
Brite
KEGG Orthology (KO) [BR:
sfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfs03016
]
SFyv_4016
Enzymes [BR:
sfs01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
SFyv_4016
Transfer RNA biogenesis [BR:
sfs03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SFyv_4016
Prokaryotic type
SFyv_4016
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AIL41976
LinkDB
All DBs
Position
complement(2868063..2869112)
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AA seq
349 aa
AA seq
DB search
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVAD
ALAKFLKIHSREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRK
LRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQ
TNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEE
LAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRA
MLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgattgagtttgataatctcacttacctccacggtaaaccgcaaggcaccgggctgctg
aaagccaatccggaagactttgtggtggtggaagatttgggctttgagcctgatggtgaa
ggtgagcatattctggttagaatcctcaaaaacggctgcaatacccgttttgtggcggat
gcactggcgaaattcctgaaaattcattcccgtgaagtcagcttcgctgggcaaaaagac
aaacatgctgtaacggaacagtggttatgtgctcgcgtgccgggcaaggaaatgcccgat
ctgagcgcctttcaactggaaggctgccaggtgctggagtatgcgcggcacaagcgcaag
ctgcgtttaggggcgctgaaaggtaacgcctttaccctggttctgcgcgaagtgagcaat
cgcgatgacgttgaacaacgtctgatcgatatttgcgtaaaaggtgtaccgaactacttc
ggtgcccaacgttttgggattggcggtagcaacttgcagggcgcgctgcgctgggcgcaa
accaatactccggtgcgcgatcgcaataaacggagtttttggttgtcggcagcccgcagt
gcgttgtttaatcagattgttgctgagcgcctcaaaaaagcagacgttaatcaagttgtt
gacggcgatgcgctacaattagccggacgtggtagctggtttgtagcaaccaccgaagaa
ctggcggaattacagcgtcgcgtcaacgataaagagctgatgataaccgccgcattgccg
ggcagtggcgaatggggaactcagcgtgaagcgctggcattcgaacaagcagctgtcgcc
gcagaaactgaattacaagctttactggtgcgcgaaaaagttgaagccgcgcgcagagcg
atgctgctgtatccgcaacaattaagctggaactggtgggatgacgtcaccgtagagatc
cgtttctggcttccggcgggtagttttgcaaccagcgttgtcagggaacttatcaacaca
acaggtgattatgcgcatattgctgagtaa
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