Shigella flexneri Shi06HN006 (serotype Yv): SFyv_4297
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Entry
SFyv_4297 CDS
T03315
Name
(GenBank) superfamily I DNA helicase
Organism
sfs
Shigella flexneri Shi06HN006 (serotype Yv)
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Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
PLDc_2
AAA_30
Viral_helicase1
AAA_19
ATPase
AAA_16
AAA_22
GvpD_P-loop
NPHP3_N
ABC_tran
NACHT
DEAD
AAA
nSTAND3
T2SSE
NB-ARC
Rad17
AAA_24
AAA_25
UvrD_C_2
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AIL42187
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Position
3080077..3083592
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AA seq
1171 aa
AA seq
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MDENALGFASYWRNSLADAESGKGSFKRKDAQNFTHWHGIAAGRLDEAIVSKFFEGEKDD
VETVDVILRPKVYFRLLQHGKDRSAGAPDIVTPIVTPALLSREGFLYPTPATSIPRDLLE
PLPKGAFSIGEIGQYDKYKTTHTTFSINFDDSVDKTAETDEEREARYAALQQEWRQYLYD
SERLLKSVAGDWIEKPEQYELAEHGYIVKTAQSGGASSHILSLYDHLLVCNKDVPLFNRF
ASREVHAAESLLAPGAKFSDRLGHSGDKFPLAKAQRDALSHFLDARHGDILAVNGPPGTG
KTTLVLSIIATQWARAALEKSEPPVIIATSTNNQAVTNIIEAFGKDFSQGSGAMAGRWLP
ELKSFGAYFPSISRKAEAAKKYQTEDFFNQVESKEYVEDALLFYLEKAKAAFPGKECSSP
EKVIELLHGQLAAKSEQLIRLNATWQTLSQIRAARELIANDIEQYLDNLNKLLSGQEQKV
TLLKSAKTEWKKYRAGESLIYSLFSWLPAVRNKRQYQIQLFLEDKLGALIAGNQWSDPET
IERNIDGLLNSAEREQTTYRQQIDSAHEIVLKEQQAVQEWQRLAFDLGYEGDEELSFSQA
DELADTQIRFPAFLLTTHYWEGRWLMDMASIDDLQDEKKKKGAKGVTARWQRRMKLTPCV
VMTCYMLPGNMQISEHKGQRKFEKSYLYDFADLLIVDEAGQVLPEVAAASFALAKKALVI
GDTEQIPPIWSIAPAIDVGNMLAEKILSGSTQEEITEKYTAIADLGKSAASGSVMKIAQF
ASRYQYDPELARGMYLYEHRRCYDNIIGYCNTLCYHGKLLPKRGREESNLMPAMGYLHID
GKGELASSGSRYNLLEAETIAVWLAENQQNIEAHYGKSLHEVVGIVTPFSAQVSTIKQVL
GKQDISTGTNEKSLTVGTVHSLQGAERAIVIFSPVYSKHEDGGFIDSDNSMLNVAVSRAK
DSFLVFGDMDLFEVQPASSPRGLLAKYLFESEKNALSFDYKERKDLKTAGTKIYTLHGVE
QHDNFLNQTFENTSKHITIISPWLTWQRLEQTGFLDSMIAACSRGINVTIVTDRSYNTEH
NDFEKRKEKQQNFKAALEKLNALGIATKLVNRVHSKIVIGDDGLLCVGSFNWFSATREAR
YERYDTSMVYCGDNLKGEIEAIYNSLERRQV
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaatgctttagggtttgcctcatactggcgcaactcgcttgcggatgctgag
tcaggaaagggcagttttaaacggaaagacgcccaaaatttcactcactggcatgggata
gcggcgggacgtcttgacgaagcgattgtcagtaaattttttgagggagaaaaagacgat
gtcgaaacggtcgatgtcatcttgcgcccaaaagtttatttccggttactgcagcatggt
aaggaccgttccgcaggcgcgcctgatattgttaccccgatagtgacgccagccttgcta
agccgtgagggttttttatatccgacgccagcgacctccattcccagagacctgcttgaa
cctttgccaaaaggagcattttcgattggtgagattgggcagtatgacaaatacaagacg
acccataccacgttctctatcaactttgatgacagcgttgataagactgccgaaacggat
gaagaacgggaagcacgatatgccgccttgcagcaggagtggcgtcaatatctgtatgac
tcagagaggctactgaagagcgttgccggcgactggattgaaaaacctgagcaatatgaa
ctcgctgagcacggttatattgttaaaacggctcaatctggcggtgccagttcccatatc
ctttctctttatgatcacctgcttgtttgcaataaggatgtgccgctcttcaatcgcttc
gcctcgcgagaggttcatgctgcagagtctttgctggccccaggagcaaaattcagcgac
aggcttggacactccggagataagtttccgctggcaaaggctcagcgcgatgccttaagc
cattttctggatgcaagacatggcgatatccttgctgttaatggccctccgggaaccgga
aaaaccacgctggtgctttctatcatcgccacgcagtgggccagagcggctctcgaaaaa
tctgagcctccggttattatcgcgacttcaacgaataaccaggctgtaacgaacattatt
gaggcattcgggaaagacttttcgcaaggttcaggtgcgatggccgggcgatggttgcca
gagctgaaaagcttcggtgcttattttccctcaatcagtcgtaaagctgaggcagccaaa
aaatatcaaactgaagatttcttcaaccaggttgagtcaaaagagtatgtagaggatgca
ctgctgttttatctggaaaaggctaaggcagcctttcctggaaaagagtgttcatcccct
gaaaaggtcattgaactcttgcatggtcagttggcagcaaaatctgagcaactgataaga
ctgaacgcaacatggcaaacgttaagccagattcgggctgcgcgtgagcttattgctaat
gatattgagcaatatctcgataatttaaataaattactttccggacaagaacaaaaagtc
actctactgaagagtgctaaaacggaatggaaaaaatatcgcgccggtgaatcactgatc
tattcattattttcctggctcccggcggttcgcaataagcgacagtaccaaatacagctg
tttctcgaagataaattaggcgcgctgattgcaggaaatcagtggtctgatcctgaaact
atcgaacgtaatattgatgggctgctcaattccgctgagcgcgagcaaacaacataccgg
cagcagattgactccgcccatgaaatcgttcttaaagaacagcaggcggttcaggagtgg
cagaggctggcatttgatttagggtatgagggcgacgaggaactgagcttctcacaggcc
gatgaactggctgatacgcagattcgcttccctgcatttttactgacgactcactactgg
gaaggtcgttggctgatggatatggccagcattgatgatctgcaggatgagaagaagaaa
aaaggtgctaaaggggtaaccgcccgttggcaacgtcgaatgaaactcacgccatgtgtg
gtgatgacatgctatatgctgcccggtaatatgcagataagtgagcacaaaggacaacgt
aaattcgagaaaagttatttgtatgattttgccgatttactcattgtcgatgaagccggg
caggtgcttcctgaagtggctgctgcctcgtttgcattagctaagaaggcattagtgatt
ggcgatacggagcagatcccgccaatatggagtattgctcctgcgattgatgtcggtaac
atgctggcggaaaaaattctgtctggcagtacgcaagaagagattaccgagaaatatacg
gcaatcgcagaccttggtaaaagtgccgcatctggcagcgttatgaaaatagcgcagttt
gcttcgcgctatcaatatgatcccgaactggctcgtggtatgtacctatatgaacaccgc
cggtgctacgacaatattattggatactgtaatacgctctgctatcacggtaagttgttg
cctaaaagagggcgtgaagagagcaatttaatgcccgcaatggggtatctccatattgat
ggtaaaggagagctggcaagtagtggaagtcgatataatttgcttgaggctgaaacgata
gcggtctggttggcagagaaccagcaaaatattgaagcgcattacggtaaatcgcttcat
gaagttgtcggtattgtgacgccttttagcgctcaggtatccactatcaaacaggtgctg
ggcaaacaagatatcagtacaggcacgaatgaaaagtcgctcacagtgggcaccgtgcac
tctcttcagggagcggaaagagcgattgtgatattctcgccagtctattcaaaacatgaa
gacggcgggtttattgatagcgataacagcatgctgaatgttgcagtctcccgtgcgaag
gacagttttctggtcttcggcgatatggacctgtttgaggtccagccagcctcatcgcca
cggggattactggcaaaatacctctttgagtcagagaagaatgcgctctcttttgattat
aaagagcgtaaggatttaaaaaccgccgggaccaaaatctacacacttcatggtgtggag
caacatgataatttcctgaatcagacatttgaaaataccagtaaacacatcacgataatt
tctccatggctgacctggcaaaggctggagcaaaccggttttcttgattccatgattgcg
gcgtgttcacgtggaattaacgtcacgatagtcactgacagaagctacaacactgaacat
aatgattttgagaagcgaaaagagaagcagcagaactttaaagcggcgctggagaaactg
aatgcgctgggtattgctacaaagctggtaaaccgtgttcatagcaaaattgttattggt
gatgatggtttgctgtgtgtgggatcgttcaactggtttagtgcgacacgggaagcgcga
tatgaacgatacgatacatcaatggtttattgcggtgataacctgaagggtgagattgag
gctatttataatagtcttgagaggcgtcaggtttag
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