Shigella flexneri Shi06HN006 (serotype Yv): SFyv_4973
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Entry
SFyv_4973 CDS
T03315
Name
(GenBank) RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
sfs
Shigella flexneri Shi06HN006 (serotype Yv)
Brite
KEGG Orthology (KO) [BR:
sfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfs03000
]
SFyv_4973
Transcription factors [BR:
sfs03000
]
Prokaryotic type
Other transcription factors
Others
SFyv_4973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA
Mg_chelatase
NACHT
AAA_16
AAA_22
AAA_30
AAA_7
AAA_19
AAA_33
AAA_2
AAA_14
T2SSE
Cas_Csm6_CARF
ATPase_2
ResIII
TsaE
MCM
NPHP3_N
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
AIL42694
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All DBs
Position
3553681..3555279
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AA seq
532 aa
AA seq
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MRKTVAFGFVGTVLDYAGRGSQRWSKWRPSLCIYQQESLVIDRLELLHDARSRSLFETLK
RDIASVSPETEVVGVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ
ICWFLLAEARYLPARLIQSSTPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD
FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQFSG
AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA
MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG
LRQRQEDIEPNLDYEVERHATLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT
RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI
CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaacagtggcttttggctttgtcggtaccgtgctggattatgccggacgcggc
agtcagcgctggtcaaaatggcgtccgtcactctgtatataccagcaagaatcgttggtc
atcgatcgactggaattattgcacgatgcccgctcgcgctcgctatttgaaacgcttaaa
cgcgatatcgccagcgtttcgccagaaacagaagtggtgggcgttgagattgaactgcat
aacccgtgggatttcgaagaggtttacgcctgcctgcatgatttcgcccgtggttacgag
tttcagccagaaaaagaagactatttaattcacatcaccaccggcacccacgtcgcgcag
atttgctggtttctgctggcggaagcgcgttatctacccgcccggttgatacaatcttca
actccgcgcaaaaaagaacagccgcgcggcccaggtgaagtgacgattatcgatctcgat
ttaagccgttataacgccatcgccagccgctttgccgaggaacggcagcaaacgctcgat
ttcctcaaatccggtattgccacgcgtaacccccacttcaaccgcatgattgagcagatc
gaaaaagtggcgattaaatcccgcgcgccgattctgcttaacggcccgaccggcgcaggt
aagtcatttctggcgcgacgcatcttcgagttaaaacaggcacggcatcagtttagcggc
gcgtttgtggaagtgaactgcgccaccctgcgcggcgataccgcgatgtcgacgctgttt
ggtcatgtgaaaggcgcgtttaccggggcgcgggaatctcgtgaaggattattacgcagc
gccaacggcggaatgttgtttcttgatgagattggcgaactgggcgcagacgaacaggca
atgctgctgaaagctattgaagagaaaaccttttacccgtttggcagcgatcgccaggtg
agcagtgattttcagcttatcgccggaacggtgcgcgatttgcgccagctggttgccgaa
ggcaaattccgcgaagatctgtacgcgcggatcaatctctggaccttcaccctgccgggt
ctacgccagcgccaggaagatattgaaccgaacctggattatgaagtggagcgccacgcc
acactcactggtgacagcgtgcgttttaacaccgaagcgcggcgtgcctggctggccttt
gcaacatctccccaggcaacatggcgcggtaactttcgcgaactttctgccagcgtcacg
cggatggccacctttgccactagcggacgcatcactctggacgtggtggaagatgagata
aaccgtctgcgctataactggcaggagagccgcccctccgcgcttacggcgttgctgggc
gcagaggcagaaaacatcgatctcttcgaccgtatgcaactggaacacgttatcgctatc
tgccgccaggcaaagtcgctttctgctgccggacgacagctttttgatgtttcgcgccag
ggcaaagccagcgtcaatgacgcggatcggctacgcaaatacctggcgcgttttggtctg
acgtgggaagccgtgcaggatcagcacagctccagttga
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