Shigella flexneri Shi06HN006 (serotype Yv): SFyv_5381
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Entry
SFyv_5381 CDS
T03315
Name
(GenBank) putative long polar fimbriae
KO
K07347
outer membrane usher protein
Organism
sfs
Shigella flexneri Shi06HN006 (serotype Yv)
Pathway
sfs02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
sfs00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SFyv_5381
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sfs02000
]
SFyv_5381
02044 Secretion system [BR:
sfs02044
]
SFyv_5381
02035 Bacterial motility proteins [BR:
sfs02035
]
SFyv_5381
Transporters [BR:
sfs02000
]
Other transporters
Pores ion channels [TC:
1
]
SFyv_5381
Secretion system [BR:
sfs02044
]
Chaperone-usher system
Type 1 pilus assembly protein
SFyv_5381
Bacterial motility proteins [BR:
sfs02035
]
Pilus system
Fimbrial proteins
SFyv_5381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Usher
PapC_N
PapC_C
Big_6
Motif
Other DBs
NCBI-ProteinID:
AIL43003
LinkDB
All DBs
Position
3852650..3855172
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AA seq
840 aa
AA seq
DB search
MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSV
DIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIKVDALKSFNDVDETVCLDP
APRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHTLR
SDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIM
IGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQ
SAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDVDVSVGE
LRDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTHA
RANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPEDFWE
TGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSWNVSWS
YSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSG
TALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGIL
AHSEGVTLSQELGETIALVKAPGAARLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISD
NYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDA
SLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgaccagaatagtggttggcctcacggcagggacgtgtctgattttctcgcaa
aacctgatggccgaggtcagtgtattcaatccggcgcttctggaaatcaaccatcaatcc
ggagtcgatattcgccagtttaatcgggcaaacctgatgcccccaggtgtttatagcgtt
gatatttttatcaacggtaaaatgtttgaacgtcaggatgtgacatttgttcaggataat
ccagatgctgatctgcacgcttgctttattgccattaaaaaaacactgtcctcctttggc
ataaaagttgatgcgctcaaatcgttcaatgatgtggatgagacggtttgcctcgatcct
gctccacgtattgaaggctcatcctggcagtttgacagtgataaattgcagctgaatata
tccattcaccaaatctacatggacgcgatggcttatgattacatcagccccacgcgttgg
gatgaggggattaatgcgctcaccatcaactacgatttttctggttcacatacactacgt
tcagattatggttcacaagagacagataccagttatctcaatctgcgcaatggactgaat
attggaccgtggcggctacgtaattacagtactttaaacaccagcgatggccgtgcggaa
tacaactccattagtacctggatacagcgcgatattgccgcgttaagaagccagattatg
attggtgatacgtggacggcgagcgatattttcgacagtacgcaaattcgcggcgcgcgt
ttgtatactgataacgatatgctacccgccagccagaatggctttgctcctgtggttcgt
gggattgcaaagtccaacgccaccgtcatcattcggcagaatggctacgtgatttatcag
tcagccgttccacaaggtgcttttgagatcaccgatctcaacaccgcaagtacaggtggc
gatttggacgtaaccatcaaagaagaagacggtagcgaacaacgattcacccaaccttat
gcttcattggcgattcttaaacgtgaaggtctgacagatgttgatgtcagcgtgggtgaa
ttgcgcgatgaagacggatttacaccggacgtccttcaggcgcaaatacttcatggtttt
tcccacgggatcactttatatggaggtatgcaggctgctgaaaattatggttctgcagct
ctgggtgtcggtaaagatcttggcgctttgggcgcaatttctttcgatgtgacacatgct
cgtgcgaattttagccatgatgatacagaaacgggtcagtcatatcgctttctctattca
aaactatttgacgacacagacactagcttgcgcctggttggctatcgttactccaccgag
ggctactataccctcaatgagtgggcatcgcggcgcaacagccctgaagacttttgggaa
acaggtaaccgacgtagtcgcgtggagggaacgctaacgcagtcgttggggagagattat
ggcaatttatacctgacattaagccggcaacaatactggcataccgatgatgtcgaacga
ttaatgcaatttggctacagcagtagctggaagcgtctctcgtggaacgtctcctggagt
tattccaatactgccagacaggggacggggaacaaccatgccagtgataacaccagtgag
cagatctacatgctctctttatctgttcctttatcgggctggtggggtaatagttacgcc
acctattctgtttcgcaaaacgataattccggtagctcacatcaactcggactcagcggt
acggcgctggaaagaaataacctttcatggaatttaatgcagtcctataacagtcatgat
gatgaggttggcggtaatatgtccctgacctatgatggctcttatggcacggtgaacggc
agctataactacagccaaaattcccagaggctgaattatggtatcagagggggaattctg
gcacacagcgaaggggtaacgttaagtcaggagttaggtgaaactattgctcttgttaaa
gcacctggggccgccaggttagaaatagataatatgcgcggtgctgcgacggactggcgc
ggctatacggtcaagacacagctaaacccttatgatgaaaatcgggtagcaatcagcgat
aactatttctcgaagtcgaatatagaacttgataataccgtcgttacgatggttcccacg
cgtggtgcagtggttaaagcggagtttgtgactcatgtgggttatcgcgttctcttcaga
gtgttaaatgcaaatggtaaaccggtaccttttggagccattgctgcgatacaagatgca
agtttggcagattcaggaattgtcggtgaccgtggcgaactttatctttctggtctacca
gaaaaaggacaggttacgttatcctggggagaaaacgcctcaacaaaatgcatcttcaat
tattcattttcgacaccagaaagtgagagcggattaattgaacagggtgtgacatgtcat
taa
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integrated database retrieval system
