Shigella flexneri Shi06HN006 (serotype Yv): SFyv_5609
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Entry
SFyv_5609 CDS
T03315
Name
(GenBank) DapF
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
sfs
Shigella flexneri Shi06HN006 (serotype Yv)
Pathway
sfs00300
Lysine biosynthesis
sfs00470
D-Amino acid metabolism
sfs01100
Metabolic pathways
sfs01110
Biosynthesis of secondary metabolites
sfs01120
Microbial metabolism in diverse environments
sfs01230
Biosynthesis of amino acids
Module
sfs_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
sfs00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
SFyv_5609
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
SFyv_5609
Enzymes [BR:
sfs01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
SFyv_5609
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Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
CntK_N
Motif
Other DBs
NCBI-ProteinID:
AIL43167
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Position
4020712..4021539
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AA seq
275 aa
AA seq
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MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFH
YRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMG
EPNFEPSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVDDVDTAAVETLGPVL
ESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGLLDEEVR
VELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagttctcgaaaatgcatggccttggcaacgattttatggtcgtcgacgcggta
acgcagaatgtctttttttcaccggagctgattcgtcgcctggcggatcggcacctgggg
gtagggtttgaccagctgctggtggttgagccgccgtatgatcctgaactggattttcac
tatcgcattttcaatgctgatggcagtgaagtggcgcagtgcggtaacggtgcgcgctgc
tttgcccgttttgtgcgtctgaaaggactgaccaataagcgtgatatccgcgtcagcacc
gccaacgggcggatggttctgaccgtcaccgatgatgatctggtccgcgtaaatatgggc
gaacccaacttcgaaccttccgccgtgccgtttcgcgctaacaaagcggaaaagacctat
attatgcgcgccgccgagcagacaatcttatgcggcgtggtgtcgatgggaaatccgcat
tgcgtgattcaggtcgatgatgtcgataccgcggcggtagaaacgcttggtcctgttctg
gaaagtcacgagcgttttccggagcgcgccaatatcggttttatgcaagtggttaagcgc
gagcatattcgtttacgcgtttatgagcgtggggcaggagaaacccaggcctgcggcagc
ggcgcgtgtgcggcggtggcggtagggattcagcaaggtttgctggacgaagaagtacgc
gtggaactccccggcggtcgtcttgatatcgcctggaaaggtccgggtcacccgttatat
atgactggcccggcggtacatgtctacgatggatttattcatctatga
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