Shigella flexneri Shi06HN006 (serotype Yv): SFyv_5891
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Entry
SFyv_5891 CDS
T03315
Name
(GenBank) Phosphomethylpyrimidine synthase
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
sfs
Shigella flexneri Shi06HN006 (serotype Yv)
Pathway
sfs00730
Thiamine metabolism
sfs01100
Metabolic pathways
sfs01240
Biosynthesis of cofactors
Module
sfs_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
sfs00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
SFyv_5891
Enzymes [BR:
sfs01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
SFyv_5891
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Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
AIL43368
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Position
complement(4226783..4228678)
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AA seq
631 aa
AA seq
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MSATKLTRREQRARAQHFIDTLEGTAFPNSKRIYITGTHPGVRVPMREIQLSPTLIGGSK
EQPQYEENEAIPVYDTSGPYGDPQIAINVQQGLAKLRQPWIDARADTEELTVRSSDYTRT
RLADDGLDELRFSGLLTPKRAKTGRRVTQLHYARQGIITPEMEFIAIRENMGRERIRSEV
LRHQHPGMSFGAHLPENITAEFVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKVNANI
GNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYIHETREWILRNSPVPIGTVPIYQAL
EKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHAGVLLRYVPMTAKRLTGIVSRGGSIMA
KWCLSHHQENFLYQHFREICEICAAYDVSLSLGDGLRPGSIQDANDEAQFAELHTLGELT
KIAWEYDVQVMIEGPGHVPMQMIRRNMTEELEHCHEAPFYTLGPLTTDIAPGYDHFTSGI
GAAMIGWFGCAMLCYVTPKEHLGLPNKEDVKQGLITYKIAAHAADLAKGHPGAQIRDNAM
SKARFEFRWEDQFNLALDPFTARAYHDETLPQESGKVAHFCSMCGPKFCSMKISQEVRDY
AAAQTIEVGMADMSENFRARGGEIYLHKEEA
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaacaaaactgacccgccgcgaacaacgcgcccgggcccaacattttatcgac
accctggaaggcaccgcctttcccaactcaaaacgcatttatatcactggcacacacccc
ggcgtgcgcgtgccgatgcgtgagatccagcttagcccgacgctaattggcggtagcaaa
gaacagccgcagtacgaagaaaacgaagcgattccggtctacgacacctccggcccgtat
ggtgatccgcagatcgccattaacgtgcagcaagggctggcaaaactacgccagccgtgg
atcgatgcgcgcgccgataccgaagaacttaccgtgcgcagttccgattacaccagaacg
cggctggcagatgatggtctcgacgagctacgttttagcggcttattaacgccaaaacgc
gccaaaacaggacgccgtgtcacccaactgcactacgcccgccagggcatcatcacgccg
gaaatggaattcatcgccatccgcgagaatatgggccgcgagcgcatccgtagcgaggtt
ttacgccaccagcatccgggaatgagctttggcgcacatctgccggaaaatatcactgcg
gaatttgtccgtgatgaagttgctgccggacgtgcgattatcccggccaacattaatcat
ccggaatcggagccgatgattattggccgtaacttcctggtaaaagttaacgccaatatc
ggcaactcggcggtcacctcttccatcgaagaagaagtggaaaagctggtatggtccacg
cgctggggagcggatacggtgatggatctctccaccggtcgctatattcacgaaacccgc
gagtggattttgcgtaacagtccggtgccgatcggtacagtgccgatctaccaggcgctg
gagaaggttaacgggatcgccgaagatcttacctgggaagcgttccgcgacacgctgctg
gaacaggccgagcaaggtgtggattacttcactatccatgcgggcgtactgctgcgctat
gtgccgatgaccgcgaaacgcctgaccggtatcgtctctcgcggcggttcgattatggcg
aaatggtgcctctcccatcatcaggaaaatttcctctatcaacacttccgcgaaatttgt
gaaatctgtgccgcttatgacgtttcgctgtcgctgggcgacggtctgcgccccggttct
attcaggacgccaacgatgaagcgcagtttgccgaattgcatacgctgggcgaactgacc
aaaatcgcctgggaatatgacgtacaggtgatgattgaaggcccaggccatgtgccgatg
cagatgatccgccgcaatatgaccgaggagttagagcactgccacgaagcgccgttttac
actctggggccgctaactaccgatattgcaccgggctatgaccacttcacgtcggggatt
ggtgcggcgatgattggctggtttggctgcgcgatgctctgttacgtaacgccaaaagag
catctgggtctgcccaataaagaagatgttaagcaggggcttatcacttataagattgcc
gcccacgctgctgacctggcaaaagggcatccgggcgcgcaaattcgcgataacgccatg
tcgaaagcccgcttcgaatttcgctgggaagaccagtttaatctggccctcgacccgttt
accgcccgcgcttatcacgatgaaaccctgccccaagagtccggcaaagtcgcccatttt
tgctccatgtgtgggccaaaattctgctcgatgaaaatcagccaggaagtacgcgattac
gccgccgcgcaaaccattgaagtgggaatggcggatatgtcggagaacttccgtgccaga
ggcggagaaatctacctgcataaggaggaagcgtga
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