Shigella flexneri NCTC1 (serotype 2a): NCTC1_00142
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Entry
NCTC1_00142 CDS
T03751
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase,2'-5'-RNA ligase,2'-5' RNA ligase,2'-5' RNA ligase,2',5' RNA ligase family
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sft
Shigella flexneri NCTC1 (serotype 2a)
Brite
KEGG Orthology (KO) [BR:
sft00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sft03016
]
NCTC1_00142 (ligT)
Enzymes [BR:
sft01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
NCTC1_00142 (ligT)
Transfer RNA biogenesis [BR:
sft03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
NCTC1_00142 (ligT)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
CDX05435
UniProt:
A0A380B9P4
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All DBs
Position
1:complement(152771..153301)
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AA seq
176 aa
AA seq
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MSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHLTLAFLGEVSAEKEKAL
SLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQSNR
PFHPHITLLRDASEAVTFPPPGFNWSYAVTEFTLYASSFARGRTRYTPLKRWALTQ
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaccgcaacgtctgttctttgctatcgacttacctgcagaaatccgcgaacag
attatccattggcgcgccacacacttcccacctgaggcgggacgtccggtcgccgccgat
aatttgcacctgactctggcatttttaggcgaagtgagcgcagagaaagagaaggcgctt
tctcttttagccggacggattcgtcaacctggtttcacactcacgcttgatgacgccgga
caatggctgcgttcgcgtgtggtgtggttagggatgcgtcagcctccacgcggcttaatc
cagctggcgaatatgctccgttcacaggctgcccgcagcggttgttttcaaagcaatcgt
ccgtttcatccacatattaccttattgcgcgacgccagcgaggcggtgacattcccgccg
ccgggttttaactggtcttatgcggtgacggagttcaccctttacgcctcctcgtttgcc
cgtggacgcacacgctacacgccgctaaaacgctgggcgctaacgcaataa
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