Shigella flexneri NCTC1 (serotype 2a): NCTC1_00834
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Entry
NCTC1_00834 CDS
T03751
Symbol
ybjD
Name
(GenBank) putative OLD family ATP-dependent endonuclease,Predicted ATPase,Protein of unknown function (DUF2813)
KO
K07459
putative ATP-dependent endonuclease of the OLD family
Organism
sft
Shigella flexneri NCTC1 (serotype 2a)
Brite
KEGG Orthology (KO) [BR:
sft00001
]
09190 Not Included in Pathway or Brite
09192 Unclassified: genetic information processing
99976 Replication and repair
NCTC1_00834 (ybjD)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF2813
OLD-like_TOPRIM
AAA_15
AAA_21
AAA_29
ABC_tran
AAA_23
SMC_N
Amidohydro_3
DUF3801
Motif
Other DBs
NCBI-ProteinID:
CDX06090
UniProt:
A0AA87DNM7
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Position
1:818180..819838
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AA seq
552 aa
AA seq
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MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDF
WFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAE
DGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVE
VTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNE
QRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLH
PIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTED
SRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLK
PLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQ
GFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMF
SRVLWLARGRAD
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgattcttgagcgcgttgaaattgtgggttttcgcggtatcaaccgtttgtcgttgatg
ctcgaacaaaacaacgtcctgattggggagaacgcgtggggtaaatccagcttgctggac
gccttaaccctgctgctatcgccagaatcagatctctaccattttgagcgcgacgatttc
tggttcccgccgggagatatcaacgggcgagaacatcatctgcatattattttgaccttc
cgcgaatcgctgccaggccgacatcgggttcgccgttatcggccgctggaagcgtgctgg
acgccatgcaccgatggctatcaccgtattttttatcgtctggaaggggagagtgcggaa
gacggcagcgtgatgacactgcgcagttttctcgataaagacggacatccgattgatgtt
gaggatattaacgatcaggcacgccatctggtgcgtttaatgccggtgctgcgcttgcgt
gatgcccgttttatgcgccgtattcgtaacggcacggtgccaaatgtccccaatgtggaa
gtcaccgcgcgccagctcgatttcctcgcccgtgagttgtcctcacatccgcaaaatctc
tctgatggacagattcgtcagggactttccgcaatggtgcagttgcttgagcattatttc
tctgagcagggggctggacaggcgcgatatcgtttaatgcggcggcgggccagcaatgag
caacgaagctggcgctatctggacatcatcaaccggatgattgaccgacctggagggcgc
tcgtatcgggttattttgctcggcctgtttgctactttattgcaggcaaaaggcacattg
cgactggataaagacgcgcgtccgttattgctaattgaagatccagaaacccgcctgcat
ccgattatgctttccgttgcctggcatctgttgaatcttttgcctttacagcgtattgct
accaccaactctggcgagctgctttcgttaactccagtggaacatgtttgccgcctggtg
cgtgaatcttctcgtgttgccgcctggcgtctggggccaagtggcttgagcaccgaagac
agccgccgcatctcttttcacattcgttttaatcgtccgtcatcgctgtttgctcgctgc
tggttgctggtggaaggggaaacggaaacctgggttatcaatgaactggcgcgtcagtgc
ggacatcattttgatgccgaagggatcaaggtcattgagtttgcccagtccgggctaaag
ccactggttaaatttgcccgccgaatggggattgaatggcatgtactggtcgatggcgat
gaagcagggaagaaatatgccgctacggtacgcagcctgttgaataacgatcgggaagcc
gaacgagaacatttaacggcgttaccggcgctggatatggaacattttatgtatcgccag
ggattttccgatgtgttccaccgcgtggcgcaaatcccggaaaatgtaccgatgaatcta
cgcaaaattatctcgaaagcgatccatcgctcttccaaacccgatcttgccattgaagtg
gcaatggaggcaggacgtcgtggtgtggactccgtaccaacgctgctgaaaaaaatgttc
tcacgcgtgctgtggctggcgcgcggtcgcgcggattaa
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