Shigella flexneri NCTC1 (serotype 2a): NCTC1_01525
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Entry
NCTC1_01525 CDS
T03751
Symbol
rnd
Name
(GenBank) ribonuclease D,Ribonuclease D,ribonuclease D,Ribonuclease D,ribonuclease D,3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sft
Shigella flexneri NCTC1 (serotype 2a)
Brite
KEGG Orthology (KO) [BR:
sft00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sft03016
]
NCTC1_01525 (rnd)
Enzymes [BR:
sft01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NCTC1_01525 (rnd)
Transfer RNA biogenesis [BR:
sft03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCTC1_01525 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
CDX06748
UniProt:
A0A9P2IXW9
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All DBs
Position
1:1424522..1425637
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AA seq
371 aa
AA seq
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MITTDDALASLCEAVRVFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS
PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE
YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR
LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL
WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR
KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAE
ALHNLLQEYPQ
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgattaccacggacgatgcgctggcttctttgtgtgaagccgtccgtgtctttccggcg
atagccctggatactgaatttgttcgtacgcgcacttattacccgcagctggggttgatt
caacttttcgatggcgagcatctggcgctaattgatcctctcgggatcaccgactggtca
ccgctgaaagcgatcctgcgcgatccgtccatcacaaaatttctccatgcaggcagtgaa
gatctggaagtgttcctcaatgtctttggcgaattaccacaacccttgattgacacgcaa
atccttgctgccttctgcggacgcccgatgtcatggggtttcgcttccatggtggaagag
tattccggcgttacgctggacaagagtgaatcgcgcaccgactggctggccagaccgctg
accgaacgtcagtgtgaatacgcagcggcggatgtctggtatctgttaccgatcaccgcc
aagcttatggtagaaacggaggcctccggctggctacctgcggcgctggatgaatgccgc
ctgatgcaaatgcgtcgtcaggaagtcgttgcgccggaagatgcctggcgtgatatcacc
aatgcctggcagttacgcacacgccaactggcctgtctgcaactgttagccgactggcga
ctgcgcaaggcgcgagagcgtgatctggcggtgaactttgtcgtgcgtgaagagcatttg
tggtcggtcgcgcgttatatgccgggaagtttaggcgaactggacagcctgggtttatcc
ggtagcgaaatccgctttcacggtaaaacgctgctggcgctggtggaaaaagcgcagaca
ttgccggaagatgccttaccgcagccgatgcttaacctgatggacatgcctggttatcgt
aaagcgtttaaagcgattaagtcgctgattactgacgtgagcgaaacgcataagatcagc
gccgaattgctggcatcgcgtcggcaaatcaaccaactgctgaactggcactggaaactg
aaaccgcagaacaatttgccggagctgatttccggctggcgtggtgagctgatggcggaa
gcattacacaatttattgcaggaatatccgcagtaa
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