Shigella flexneri NCTC1 (serotype 2a): NCTC1_01958
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Entry
NCTC1_01958 CDS
T03751
Symbol
ydbK
Name
(GenBank) pyruvate-flavodoxin oxidoreductase,Pyruvate synthase subunit porA,pyruvate flavodoxin oxidoreductase subunit alpha,Sulfite reductase, beta subunit (hemoprotein),pyruvate:ferredoxin (flavodoxin) oxidoreductase,domain
KO
K03737
pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:
1.2.7.1
1.2.7.-]
Organism
sft
Shigella flexneri NCTC1 (serotype 2a)
Pathway
sft00010
Glycolysis / Gluconeogenesis
sft00020
Citrate cycle (TCA cycle)
sft00620
Pyruvate metabolism
sft00650
Butanoate metabolism
sft00720
Other carbon fixation pathways
sft01100
Metabolic pathways
sft01110
Biosynthesis of secondary metabolites
sft01120
Microbial metabolism in diverse environments
sft01200
Carbon metabolism
sft01210
2-Oxocarboxylic acid metabolism
Module
sft_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
sft00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
NCTC1_01958 (ydbK)
00020 Citrate cycle (TCA cycle)
NCTC1_01958 (ydbK)
00620 Pyruvate metabolism
NCTC1_01958 (ydbK)
00650 Butanoate metabolism
NCTC1_01958 (ydbK)
09102 Energy metabolism
00720 Other carbon fixation pathways
NCTC1_01958 (ydbK)
Enzymes [BR:
sft01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.7 With an iron-sulfur protein as acceptor
1.2.7.1 pyruvate synthase (ferredoxin)
NCTC1_01958 (ydbK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POR_N
POR
EKR
PFOR_II
Fer4_7
Fer4_16
Fer4_9
Fer4_21
Fer4
Fer4_10
Fer4_8
Fer4_2
Fer4_6
Fer4_17
Fer4_4
Fer4_18
Transketolase_C
Fer4_15
FlgM
Fer4_13
Motif
Other DBs
NCBI-ProteinID:
CDX07166
UniProt:
A0A9P2IXH0
LinkDB
All DBs
Position
1:1814074..1817598
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AA seq
1174 aa
AA seq
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MITIDGNGAVASVTFRISEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSE
AGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTPFVLHVAARTVATHALSIF
GDHSDVMAVRQTGCAMLCAANVQEAQDFALISHIATLKSRVPFIHFFDGFRTSHEINKIV
PLADDTILDLMPQAEIDAHRARALNPEHPVIRGTSANPDTYFQSREATNPWYNAVYDHVE
QAMNDFAAATGRQYQPFEYYGHPQAERVIILMGSAIGTCEEVVDELLTRGEKVGVLKVRL
YRPFSAKHLLQALPGSVRSVAVLDRTKEPGAQAEPLYLDVMTALAEAFNNGERETLPRVI
GGRYGLSSKEFGPDCVLAVFAELNAAKPKARFTVGIYDDVTNLSLPLPENTLPNSAKLEA
LFYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKAGGLTVSHLRVSEQPIRSAYL
ISQADFVGCHQLQFIDKYQMAERLKPSGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARF
YVINAAKIARECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVER
NWQALALARESVEEVPLQPVNPHSANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALP
PDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPAS
LHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRQEHVEEE
KINYDFFLNLPEIDRSKLERIDIRTSQLITPLFEYSGACPGCGETPYIKLLTQLYGDRML
IANATGCSSIYGGNLPSTPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRL
LDQFADKIPAELLTALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLI
GGDGWAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRK
ARKDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLAL
SHDQMRQLTATGFWPLYRFDPRRADEGKLPLALDSRPPSEALEETLLHEQRFRRLNSQQP
EVAEQLWKDAAANLQKRYDFLAQMAGKAEKSNTD
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgattactattgacggtaatggcgcggttgcttcggtgacgtttcgcatcagtgaagtt
atcgccatctaccctattacccccagttccacgatggcagaacaggctgatgcctgggcc
ggaaacggcttgaagaacgtttggggagacacaccacgcgtggttgaaatgcagtcggaa
gcgggtgctatcgctaccgtgcatggcgctttgcagacgggtgccctttcaacatcgttt
acgtcatcgcagggtttgctgctgatgatcccgacgctgtacaaactggcaggcgaactg
acgccatttgtcctgcatgtagcggcacgtaccgttgccacacatgcactttctattttt
ggcgatcattccgacgttatggcggtgcgccagacgggttgcgcgatgttgtgtgcggct
aacgtccaggaagcgcaagactttgctctcatttcgcacatcgcaacgctgaagagccgc
gtgccatttattcatttctttgatggttttcgcacgtcccacgaaatcaataaaattgtc
ccgctggccgatgacactattcttgatctcatgccgcaggccgaaattgatgctcatcgc
gcccgggcgctcaacccggaacatccggtgatccgcggtacgtccgccaatcctgacact
tatttccagtctcgcgaagccaccaatccctggtacaacgcggtctatgaccatgttgaa
caggcgatgaatgatttcgctgccgcgacaggtcgtcagtatcagccgtttgagtattac
gggcatccgcaagcggaacgggtgattatcctgatgggctctgccattggcacctgtgaa
gaagtggttgatgaattgctaacccgtggcgaaaaagttggcgtgctgaaagttcgtctg
taccgtcccttctccgccaaacacttgctgcaagctctgccgggatccgtacgcagcgtg
gcggtactggacagaaccaaagaacccggtgcccaggcagaaccgctctatctggatgtg
atgaccgcactggcagaagcctttaataatggtgagcgcgaaaccctgccccgtgtcatt
ggtgggcgctatggtctttcatccaaagaatttggcccggactgtgtactggcggtattt
gccgagctcaacgcggctaaacctaaagcacgctttacggttggtatttacgatgatgtg
accaatctgtcactgccgttgccggaaaacactctgccaaactcggcgaaacttgaagcc
ttgttttatggccttggtagtgatggcagcgtttccgcaaccaaaaacaatatcaagatt
atcggtaattccacgccgtggtacgcacagggctattttgtttacgactccaaaaaagcg
ggcggcctgacggtttctcaccttcgcgtgagcgaacagccgattcgttccgcttatctc
atttcccaggctgattttgttggctgccaccagttgcagtttatcgataaatatcagatg
gctgagcgtttaaaacctagcggcattttcctgcttaatacgccgtacagcgcagatgaa
gtgtggtcgcgcttgccgcaggaagttcaggccgtgttaaaccagaaaaaagcgcgcttc
tatgtgattaacgcggcgaaaatcgcccgcgaatgtggcctggcggcccgtattaatacc
gtcatgcagatggcttttttccatctgacgcaaattctgcctggcgatagcgccctcgca
gaattgcagggtgcgattgccaaaagttacagtagcaaaggtcaggatctggtggagcgc
aactggcaggctctggcgctggcgcgtgaatccgtagaagaagttccgttgcaaccggta
aatccgcacagcgccaatcgaccgccagtggtttccgatgccgcccctgatttcgtgaaa
accgtaaccgcggcgatgctcgccgggcttggtgatgccctccccgtttcggcgctgccg
ccagacggcacctggccgatgggcaccactcgctgggaaaaacgcaatatcgccgaagag
atccccatctggaaagaggaactctgtacccaatgtaaccactgcgtcgccgcttgccca
cactcagctattcgcgcaaaagtggtaccgcctgaagcgatggaaaacgcccctgccagc
ctgcattcgctagatgtgaaatcgcgtgatatgcgcgggcagaaatatgtcttgcaggtg
gcaccggaagattgcaccggttgtaacctgtgcgtcgaagtttgcccggcgaaagaccgt
cagaatccagagattaaagccatcaatatgatgtctcgccaggaacatgtcgaagaagag
aaaatcaattacgatttcttcctcaacctgccagaaatcgaccgtagcaaactggaacgt
attgatattcgtacatcgcagctgattacaccgctgtttgaatattcaggtgcttgcccc
ggttgtggcgagacgccgtatattaaattgctgactcagctctatggtgaccggatgttg
atcgctaacgccaccggctgttcttcaatttatggcggtaacctgccctctacaccgtat
accaccgatgccaacggtcgtgggccggcatgggcgaactctctatttgaagataatgcc
gaatttggccttggtttccgcctgacggtcgatcaacaccgtgtccgcgtgctgcgtctg
ctggatcaatttgccgataaaatcccggcggaattactgacggcgttgaaatcagacgct
acgccagaggttcgtcgagaacaggtcgcagctttacgccagcaactcaacgatgttgcc
gaagcacatgaacttctgcgtgacgcagatgcactggtggaaaaatcaatctggctgatt
ggtggcgacggctgggcttacgatatcggctttggcggtctggatcatgtattgagtttg
acggaaaacgtcaacattctggtgctggatacgcaatgctattccaacaccggtggtcag
gcgtcgaaagcgacaccgctgggtgcagtaactaagttcggcgagcacggcaaacgtaaa
gcgcgtaaagatcttggcgtcagtatgatgatgtacggtcatgtttatgtggcgcagatt
tctctcggcgcgcagctgaaccagacggtgaaagcgattcaggaagcggaagcgtatccg
ggaccatcgctgatcattgcttatagcccgtgtgaagagcatggttacgatctggctctc
agccacgaccagatgcgccaactcactgctaccggcttctggccgctatatcgctttgat
ccgcgtcgtgccgatgaaggcaaactgccgctggcgctggattcacgcccgccgtcagaa
gcactggaagaaacgttacttcacgagcagcgtttccgtcgtctgaattcgcagcagcca
gaagtggcagaacagttatggaaagatgctgcagctaatttgcaaaaacgctatgacttc
ctagcacaaatggccggaaaagcggaaaaaagcaacaccgattaa
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