Shigella flexneri NCTC1 (serotype 2a): NCTC1_03365
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Entry
NCTC1_03365 CDS
T03751
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD,Sigma-70,RNA polymerase sigma factor RpoD,RNA polymerase sigma factor RpoD,Sigma-70, non-essential region
KO
K03086
RNA polymerase primary sigma factor
Organism
sft
Shigella flexneri NCTC1 (serotype 2a)
Pathway
sft02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sft00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC1_03365 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sft03021
]
NCTC1_03365 (rpoD)
Transcription machinery [BR:
sft03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC1_03365 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
TMPIT
Motif
Other DBs
NCBI-ProteinID:
CDX08492
UniProt:
A0A9P2MXX8
LinkDB
All DBs
Position
1:3114883..3116724
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AA seq
613 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATH
VGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGR
SHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK
NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaaacttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcag
atcgaagacatcatccaaatgatcaacgacatgggcattcaggtgatggaagaagcaccg
gatgccgatgatctgatgctggctgaaaacaccgcggacgaagatgctgccgaagccgcc
gcgcaggtgctttccagcgtggaatctgaaatcgggcgcacgactgacccggtacgcatg
tacatgcgtgaaatgggcaccgttgaactgttgacccgcgaaggcgaaattgacatcgct
aagcgtattgaagacgggatcaaccaggttcaatgctccgttgctgaatatccggaagcg
atcacctatctgctggaacagtacgatcgtgttgaagcagaagaagcgcgtctgtccgat
ctgatcaccggctttgttgacccgaacgcagaagaagatctggcacctaccgccactcac
gtcggttctgagctttcccaggaagatctggacgatgacgaagatgaagacgaagaagat
ggcgatgacgacagcgccgatgatgacaacagcatcgacccggaactggctcgcgaaaaa
tttgcggaactacgcgctcagtacgttgtaacgcgtgacaccatcaaagcgaaaggtcgc
agtcacgctgccgctcaggaagagatcctgaaactgtctgaagtattcaaacagttccgc
ctggtgccgaagcagtttgactacctggtcaacagcatgcgcgtcatgatggaccgcgtt
cgtacgcaagaacgtctgatcatgaagctctgcgttgagcagtgcaaaatgccgaagaaa
aacttcattaccctgtttaccggcaacgaaaccagcgatacctggttcaacgcggcaatt
gcgatgaacaagccgtggtcggaaaaactgcacgatgtctctgaagaagtgcatcgcgcc
ctgcaaaaactgcagcagattgaagaagaaaccggcctgaccatcgagcaggttaaagat
atcaaccgtcgtatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagagatggtt
gaagcgaacttacgtctggttatttctatcgccaagaaatacaccaaccgtggcttgcag
ttccttgacctgattcaggaaggtaacatcggcctgatgaaagcggttgataaattcgaa
taccgccgtggttacaagttctccacctacgcaacctggtggatccgtcaggcgatcacc
cgttctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagactatc
aacaaactcaaccgtatttctcgccagatgctgcaagagatgggccgtgaaccgacgccg
gaagaactggctgaacgtatgctgatgccggaagacaagatccgcaaagtgctgaagatc
gccaaagagccaatctccatggaaacgccgatcggtgatgatgaagattcgcatctgggg
gatttcatcgaggataccaccctcgagctgccgctggattctgcgaccaccgaaagcctg
cgtgcggcaacgcacgacgtgctggctggcctgaccgcgcgtgaagcaaaagttctgcgt
atgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaacagttc
gacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgcaaactgcgtcac
ccgagccgttctgaagtgttgcgtagcttcctggacgattaa
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