Syntrophobacter fumaroxidans: Sfum_0289
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Entry
Sfum_0289 CDS
T00418
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sfu
Syntrophobacter fumaroxidans
Brite
KEGG Orthology (KO) [BR:
sfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sfu03009
]
Sfum_0289
Enzymes [BR:
sfu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Sfum_0289
Ribosome biogenesis [BR:
sfu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Sfum_0289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
Methyltransf_15
Cons_hypoth95
TRM5-TYW2_MTfase
PrmA
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
ABK15990
UniProt:
A0LEY8
LinkDB
All DBs
Position
345412..346878
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AA seq
488 aa
AA seq
DB search
MWGGRHGSKDRLPTMDDLKKGREYELLVEKLVFGGKALARVEGLVVFMDHAVPGQRVRAL
ITRKKRQYCEARVVEVLSQSEAHTEPVCPHFGVCGGCQWQDIAYEEQLKWKRVQVADSLE
HLAGAQGVKIEAAVPSDRLIHYRNKMEFTFSDRRWLTPEEIDAAGMRDAYTFTLGLHVRS
WFDKVFNVEDCLLESAEAVEIVKETRDWCRGSGVPAYGIKSQRGFWRFLVIREGKRTGQT
LLHLVTSDQPEHEAAVNTLTRHLVSRFPHITTVVHSVSRKKAQVAFGDQSRVVAGPGVIE
ERLGGLRFRISAESFFQTNPFSAEKLYDEVSRLAAFQGTETVWDLYCGTGSIALSVAPRV
ARVVGFEVVDQAIEDACVNARLNGIENARFISGDLKERINHARGPGSGEHHPDIVITDPP
RAGMHPQVVGALLEMGPGRIIYVSCNPATLARDLAFFTERYEIGTVRPFDLFPHTPHIEC
VVRMDRKR
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
gtgtgggggggacgccatggaagcaaggaccgattgccgacgatggacgacttgaagaaa
ggccgggagtacgagctcctggtggaaaagctggtttttggcgggaaagcccttgcgcgc
gtggagggattggtggtcttcatggaccatgcggttcccggtcagcgggtcagggccttg
atcaccaggaagaaacgccagtattgcgaagccagggtcgtggaggtgctctcgcaatcc
gaggcgcataccgaaccggtgtgtccccatttcggcgtgtgcggcggctgccaatggcag
gatatcgcttacgaagaacaactgaaatggaaacgagtccaagtcgccgattccctggaa
cacctggcgggggcgcagggcgtgaaaatcgaagccgccgttccgtcggaccggctgatc
cactaccggaacaagatggaattcacattctccgaccggcgctggctcacgcccgaggaa
atcgatgcggcggggatgcgggatgcctatacgttcaccctggggctccacgtccggagc
tggttcgacaaggtgttcaacgtcgaggactgcttactggagtcggccgaggcggtcgag
attgtgaaagagaccagggactggtgccgggggagcggcgttcccgcgtacggcataaag
agccagcgcggcttctggcggtttctcgtgatcagggaaggaaagcggacggggcagact
cttctgcacctggtcacttccgatcaacccgaacacgaagcagccgtgaacaccctcacg
cggcaccttgtttcgcgatttccgcacatcacgaccgtcgtgcactcggtcagtcggaag
aaggcccaggtggcgttcggcgaccagagtcgggtggttgccgggccgggggtcatcgag
gagcggttgggggggctcaggtttcggatttccgccgagtcgtttttccagaccaatccg
ttctccgcggaaaagctctatgacgaggtgtcccgccttgccgccttccagggcacggaa
acggtctgggacctgtattgcggaacgggcagcatcgccctttcggtcgcgccgcgggtg
gcccgggtggtgggctttgaagtcgtggaccaggcgatcgaggacgcctgcgtcaacgcg
cggttgaacgggatcgaaaacgcccggttcatctccggagacttgaaggaacggatcaac
catgcgcgagggccgggaagcggtgagcatcacccggacatcgtcatcacggatccgcca
cgcgccgggatgcatccgcaggtggtcggggcgctgctggaaatgggacccgggcgaatc
atctacgtgtcctgcaatccggcgactctggcgagggacctggcttttttcacggaacga
tacgaaatcgggaccgtacgtccgttcgatctgtttccgcacactccgcacatcgagtgc
gtggtgcggatggacaggaaaagatga
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