Syntrophobacter fumaroxidans: Sfum_1550
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Entry
Sfum_1550 CDS
T00418
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sfu
Syntrophobacter fumaroxidans
Pathway
sfu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sfum_1550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfu03021
]
Sfum_1550
03400 DNA repair and recombination proteins [BR:
sfu03400
]
Sfum_1550
Enzymes [BR:
sfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sfum_1550
Transcription machinery [BR:
sfu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sfum_1550
DNA repair and recombination proteins [BR:
sfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sfum_1550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
DUF3987
Topo-V_HhH_2_2nd
Motif
Other DBs
NCBI-ProteinID:
ABK17237
UniProt:
A0LII5
LinkDB
All DBs
Position
1910285..1914340
Genome browser
AA seq
1351 aa
AA seq
DB search
MKELYSLFMKPKDPLHFNAVKIMISSPERIREWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERMGHIELASPVAHIWFLRSL
PSKIGNLLDLTLRELEKVLYFDSYIVLDPGDTPLTKGELLTEEKYRQMVQEHGSGFVAGI
GAESIKQLLAGLDLEKLAVELREEMSKTNSMAKRKKLAKRLKIIDAFRESENRPEWMIMD
VIPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRMLQ
EAVDVLFDNGRRGKTITGASKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRTVIVIGPN
LRLHQCGLPKKMALELFKPFIYNKLEEKGYVTTIKAAKKMVERETPEVWDTLDEVVREFP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQAEA
RILMMSTNNILSPAHGDPIIVPSQDIVLGIYYMTREKPFAKGEDRVFSSREEVRCAFDAG
EADLHARVHVRMGDERVKTTVGRVLLSEILPEEMPFSAVNRVMNKKVLAGLIDMCYRTAG
IKATVLLADRLKDLGYEYATRSGLSISIKDMTIPHRKSEILDQAFDLVKEIERQYNEGLI
TEGEKYNKAVDIWAKATEDVAAEMMKEIATTEVGGPEGEARVVEAFNPIFMMADSGARGS
KDQMRQLAGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADTALKTANS
GYLTRRLVDVSQDVIISEPDCGTMDGIEVEALLEAGEIIQRLGDRILGRIAQEDILDPVT
AEVLVPMGTEIDEQRVQLIEDAGIEKVNIRSALTCRSLRGVCTMCYGRDLAQGKLAQIGE
AIGIIAAQSIGEPGTQLTMRTFHIGGTASKSIERTSINNRYAGTVRFLNLNTVHNRDGDL
IAMNRNGEISIISESGRERERYVIIYGAKLKVTDGQPVEPDTLLAEWDPFTTPILTEVAG
AAKFGDIVEGQTMQEKLDPVTGKSSKVVVEYRESDVRPRISIKDDKGKTARVGEGGFARY
FMPVGAILMVNEGDAIFPGDVLARIPRETTKTKDITGGLPRVAELFEVRKPKEHAVITEI
DGVIGFGKDTKGKRKVIVSPEVGDARDYLIPKGKHISVHEGDYVRAGEPLMDGSPNPHDI
LTVLGEKEVAKYLVDEVQQVYRLQGVKINDKHIEVIVRQMLKRVRITDPGDSEFLMGEHV
EKPIFEEINSKLTEEDKRPAAAEPLLLGITKASLSTQSFISAASFQETTKVLTDAATAGK
VDYLLGLKENVIMGRLIPAGSGLRTYREVRK
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagagctgtacagtctgttcatgaaacccaaggatcctttgcacttcaatgccgtg
aagatcatgatctcctcgccggagaggatccgggaatggtcttacggggaagtcaagaaa
cccgaaacgatcaactaccggaccttcaagccggaacgtgacgggcttttctgcgccagg
attttcgggccgatcaaggactacgaatgcaattgcggcaaatacaaacgcatgaagcac
cggggagtcgtctgtgaaaaatgcggggtcgaagtcatccagtcaaaggtccgccgggaa
cggatgggacacatcgaactggcgtcccccgtggctcacatctggtttcttcgcagtctg
ccgagcaagatcggcaaccttctggacctgactctgagggagctggaaaaggtcctttac
ttcgactcctatatcgtgctcgacccgggagacacccctctcaccaagggtgagcttctg
accgaggaaaagtatcggcagatggtccaggagcatggcagcgggtttgtcgccggcata
ggagcggagtccatcaagcagttgctcgccgggctcgacttggaaaagctggcggtggag
ctgcgtgaagagatgtccaagaccaattcgatggccaagcgcaagaagctggccaagcgg
ttgaagatcatcgacgcattcagggaatccgaaaaccgtccggaatggatgatcatggac
gtgattccggtcctgccgcccgacctgaggccgctcgtgccgctcgacggcggacggttc
gccaccagtgacctcaacgatctgtaccgccgggtgatcaaccgaaacaaccgtctgaaa
aggcttcaggagctcaatgcccccgatatcatcatccgcaacgagaaacgcatgctccag
gaagccgtggacgtgctgttcgacaacggccgccgcggcaagaccatcaccggcgccagc
aaacgcccgctcaagtccctgagcgacatgctgaaaggcaagcaggggcgtttccgtcag
aacctgctgggaaagcgcgtggattactcgggccggaccgttatcgtcatcgggccgaac
ctgcgcctgcaccagtgcggccttcccaagaagatggccctcgagctcttcaagcccttc
atctataacaagctggaggaaaagggctacgtgaccaccatcaaggcggccaaaaagatg
gtggagcgggaaacgccggaggtctgggacactctggacgaagtggtgcgggaattcccg
gtcatgctcaaccgggctcccactctgcaccgtctcggtatccaggcgtttgaaccgatc
ctgatcgagggaaaggcgattcagctccatcccctggtctgtacggccttcaacgcggat
ttcgacggggaccagatggcggtgcatgtgcctctgtccatagaagcccaggcggaggcg
aggattctgatgatgtccacgaacaacatcctcagccccgcccacggggatcccatcatc
gttccgtcgcaggacatcgttctgggcatatactacatgaccagggagaagcctttcgcc
aagggcgaggaccgcgttttctcgagccgcgaggaggtgcgttgcgccttcgacgcgggc
gaagcggatctgcatgcccgggtgcatgtccgtatgggagacgagcgggtgaagaccacc
gtgggacgcgtgctcctgtccgaaatcctgccggaggaaatgcccttctcggcggtaaac
cgggtcatgaacaagaaggtgctggccgggttgatcgacatgtgttaccggaccgcggga
atcaaggcgaccgtgttgctggcggaccggctcaaggacctcgggtacgaatacgcaacc
cggtccggtctttccatttccatcaaggacatgaccattccgcaccgcaagtcggaaatc
ctcgaccaggcgttcgacctggtgaaggagatcgaacggcaatacaatgagggtttgatc
accgagggcgagaagtacaacaaggcggtcgatatctgggccaaggccacggaggacgtc
gcggcggagatgatgaaggagatcgccacgaccgaggttgggggaccggaaggcgaagcc
cgggtggtggaggcgttcaacccgattttcatgatggcggattcgggcgctcgcggcagc
aaggaccagatgcgacagcttgccgggatgcgcggtctgatggccaagccttcgggggaa
atcatcgagaccccgatcaccgcgaacttccgcgaggggttgacggtgcttcagtatttc
atttccacgcacggtgcgcgcaagggcctcgccgacaccgccctcaagacggccaactcg
gggtatctcacccgtcgccttgtcgacgtgtcccaggacgtgatcatttcggaacccgat
tgcggaaccatggacggcatcgaggtcgaagcgcttctggaggccggagaaatcattcag
cggctgggcgatcgcattcttggccgcatcgcgcaggaagacatcctcgacccggtgacg
gcggaagtcctcgtgccgatgggaaccgagatcgacgagcagagagtgcaactcatcgag
gatgccggcatcgagaaagtcaatattcgctcggccctgacctgccgcagcctgcgtggc
gtgtgcaccatgtgctacggacgcgacctggcgcagggcaagctggcgcagatcggagag
gcgatcggcatcattgccgctcagtccatcggtgaaccgggaacgcagctcaccatgcgg
accttccacatcggcggcaccgccagcaagagcatcgagagaacatccatcaacaaccgt
tacgcgggcacggttcggtttctcaatctcaacaccgttcacaaccgggacggcgatctg
atcgccatgaaccgcaacggtgagataagcattatcagcgagtccggtcgtgaacgtgaa
cgatatgtgatcatctacggcgccaagctcaaggtcaccgacggccagccggtggaaccg
gatacgctgctggccgagtgggacccgtttacgacgccgattctgaccgaagtcgcggga
gccgccaagttcggggacatcgtggaaggtcagaccatgcaggaaaagctcgacccggtt
accggcaagtccagcaaggtggtggtggaatatcgcgaatcagacgtcaggccccgcatc
tccatcaaggatgacaagggaaagacggcaagggtcggcgaaggaggttttgcgcgctac
ttcatgcccgtgggggccatcctgatggtgaacgaaggcgatgccatctttcccggagac
gttctcgcaagaattccccgggaaaccaccaagaccaaggacatcaccggcggtcttccc
cgcgtggcggaattgttcgaggtgcgcaaacccaaggagcacgccgtcattacggagatc
gacggggtgatcggcttcggcaaggacaccaagggcaagcggaaggtgatcgtcagcccg
gaagtgggcgatgcgcgggactacctgatccccaagggcaagcacatcagcgttcacgag
ggcgattacgtccgcgccggcgaaccgctcatggacggttctcccaacccgcacgatatt
ctcaccgttctcggggagaaggaagtggccaagtacctggtggatgaggttcagcaggtt
tatcggttgcagggcgtcaagatcaacgacaagcatatcgaagtgatcgtgcgccagatg
ctcaagcgtgtccggatcacggacccgggggattccgagttcctgatgggtgaacacgtg
gagaagccgattttcgaggagatcaacagcaagctgaccgaggaagacaagcgcccggcg
gcggctgaaccgttgctgctcggcatcaccaaggcctcgctgagcacgcagagtttcatt
tccgcggcgtccttccaggaaaccacgaaggttttgaccgatgcggccactgccggcaag
gtggactacctgctcggcctcaaggaaaatgtgatcatggggcggctgatcccggccggg
tcgggcctcaggacctaccgggaggtgcgtaagtaa
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integrated database retrieval system
