Syntrophobacter fumaroxidans: Sfum_1612
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Entry
Sfum_1612 CDS
T00418
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sfu
Syntrophobacter fumaroxidans
Pathway
sfu03030
DNA replication
sfu03410
Base excision repair
sfu03420
Nucleotide excision repair
sfu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sfum_1612
03410 Base excision repair
Sfum_1612
03420 Nucleotide excision repair
Sfum_1612
03440 Homologous recombination
Sfum_1612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfu03032
]
Sfum_1612
03400 DNA repair and recombination proteins [BR:
sfu03400
]
Sfum_1612
Enzymes [BR:
sfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sfum_1612
DNA replication proteins [BR:
sfu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sfum_1612
DNA repair and recombination proteins [BR:
sfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Sfum_1612
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sfum_1612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_5
FucT_N
Motif
Other DBs
NCBI-ProteinID:
ABK17299
UniProt:
A0LIP7
LinkDB
All DBs
Position
complement(1965014..1967722)
Genome browser
AA seq
902 aa
AA seq
DB search
MTEQARTFYLVDGSSYIYRAYYAVSRLTNSRGFPTGAVLGFAQMLDKVVREKKPDYICVV
FDAPGPTFRHEMYAPYKATRQKAPEDMIAQIPYIKDLVRFRGIPQMELPGYEADDLIATL
THWAVEQDIEVVVVSSDKDLHQLIDDPVVRQWDPQKDRVFMEWEVEDRYGVPPGRMVDYL
ALVGDSSDNVPGVKGIGDKTARQLLQEWGSLDRIYANLARVGSASVRDKLEKHREEALLS
RRLVSFREDVPVERKLEAFAPGPPLKSQLIGLFEELEFRSLLDSLRKELNAVEPAAAAPA
GRTKHKIAGSMDELRTLAERLAGEPVVSIQVETTRKDAMASDLAGLSFGFEDDGAWYVPL
GPDGSEGDGRLPAAVALAALEPVLGRSRPAKIGHDLKTAWIVFKKHGIELRGIAFDTMVA
AYLLDPGKQNYGIDRVAAECLGENIDSYEDVTGKGKSQVGFDTIDIGRAAAYSCAAADAA
RRMHPVLKRKLDESRLTELFEKIELPLITVLARMEFRGITADAEKLESLSIDFQKALDRT
ADTIYDLAKEKFNIQSPKQLAYILFEKLGLRVVKKTKSGPSTDMAVLEELALEHPIADHV
LVFRTLAKLKGTYADALGKLINPRTGRIHTSYNQTVAATGRLSSSDPNLQNIPIRTEEGR
KIRSAFIPAPGWLLLSADYSQIELRILAHCSKDEHLLEAFRDDEDIHRRTAAEMFGVSPI
EVTPEMRRQAKTINFGIIYGMGPFGLAQRLRISTKTARTAIDKYFQGYRGVRRFIDTTIE
LARRLGYSETLLGRRRFIPELQSRNKTIRQLGERLAINTPLQGTAADLIKKAMIDAEDAL
NGSGLRTVMLLQVHDELVFETPREELAAAQELVRRVMEDVWKLDVPLKVELGWGDNWAEA
HA
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgacggaacaagccaggacattctatctcgttgacggaagctcctacatctaccgggcc
tactatgccgtctcgcggctgaccaactcgagggggttcccgacgggcgccgtcctcggt
ttcgcgcagatgctcgacaaggtggtccgggagaaaaagccggactacatctgcgtggtc
ttcgacgccccgggtcccacttttcgtcacgagatgtacgccccctacaaggcaacccgc
cagaaagctccggaggacatgatcgcccagattccttacatcaaggacctggtgaggttt
cgcggcattccccaaatggagctgccggggtacgaggccgacgatctcatcgccaccctg
acgcactgggccgtggagcaggacatcgaagtggttgtcgtctcgagcgacaaggacctg
catcaactcatcgacgatcccgtcgtgcggcaatgggacccccagaaggaccgggtgttc
atggagtgggaggtggaagaccgctacggcgtcccgcccgggcgaatggtcgactacctt
gcgctggtcggggattcttcggacaatgtcccgggcgtcaagggcatcggggacaagacg
gccagacagttgctgcaggaatggggttcgctggaccggatatacgcgaacctggcccgg
gtcggctccgcttcggtgcgcgacaagctcgaaaagcaccgggaagaggctctcctgtca
cggcggctggtgtcctttcgggaagacgtccccgtggagaggaagctcgaggcgttcgcg
ccggggccgcctctcaaatcgcagcttatcggactcttcgaggaactggaattcaggtcg
ctgctcgattccctgcgaaaggaattgaatgcggtcgaaccagccgccgcggcccccgcg
ggccgaacgaaacacaagatcgcgggctccatggatgagctgcgaacacttgcggaacgc
ctggcgggcgagcccgtcgtttcgatccaggttgaaaccacgcgcaaggatgcgatggcg
tcggaccttgcggggctttcgttcggtttcgaggacgacggggcctggtacgttcccctg
ggcccggacggttcggaaggcgatggccgactgcccgcggccgttgcgctcgccgcgctc
gaaccggtgcttggccgttcccgaccggccaaaatcgggcacgatctcaaaaccgcctgg
atcgtttttaagaagcacggaatcgagttgcgggggattgccttcgacacgatggtggcc
gcctacctgctcgatccgggaaaacagaactacggcatcgaccgcgttgccgccgaatgc
ctcggtgagaacatcgattcctacgaagacgtcacggggaaggggaaatcgcaggtcggc
ttcgacaccatcgacatcgggcgggccgccgcctattcgtgtgccgcggccgacgcggcc
cggcggatgcaccccgttttgaagcgcaagctcgatgaatccaggctgacggagctgttc
gaaaagatcgaattgcccctcatcacggtcctggcccgcatggaattcagagggataacg
gccgacgcggagaaactggaatccctttccatcgatttccagaaagccctcgatcggacc
gccgacacaatctacgatctggccaaggaaaaattcaacattcagtctcccaagcaactg
gcgtacattttgttcgagaaactcggcctgcgcgtggtgaagaagaccaagagcggccca
tccacggacatggcggtgctcgaggaactggcgctcgaacatcccatcgcggatcacgtt
ctggttttccgcacgctggcaaagctcaagggaacctacgcggatgccctggggaagctg
atcaatccccggaccgggcgcatccacacgagttacaaccagaccgtcgcggccaccggc
cggttgagcagctcggatccgaacctgcaaaacatccccataaggacggaggaggggagg
aaaatccgctccgcgttcatccccgcccccgggtggttgctgctttcggccgactactcg
cagatcgagctgcggatcctcgcccactgcagcaaggacgagcacctgctcgaggccttc
cgcgacgatgaggacatccaccgacgcacggccgcggaaatgttcggtgtctccccgatc
gaggtcacgcccgagatgagacgccaggccaagacgatcaatttcggaatcatctacggc
atgggacctttcgggctggcgcagcggttgcggatcagcacgaaaacggccaggaccgcc
atcgacaagtattttcagggctaccgcggcgtgcgaagattcatcgacaccaccatcgag
ctggcacggcgtctgggttacagcgaaacgctgctcggccggcgccgtttcatccccgag
ttgcagagccgcaacaagaccattcgacagctcggcgagcgactggccataaacactcct
ctccagggcacggccgccgacctcatcaagaaggcgatgatcgacgccgaagatgccttg
aacgggagcgggctgcgcacggtcatgctgctgcaggtgcatgacgagctggtcttcgag
acgccgcgggaagagctggcggcggcgcaggagcttgtgcggagggtcatggaggatgtc
tggaaactcgatgtgccgttgaaggtcgaactgggatggggggacaactgggccgaagcc
cacgcctga
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