Syntrophobacter fumaroxidans: Sfum_2578
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Entry
Sfum_2578 CDS
T00418
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sfu
Syntrophobacter fumaroxidans
Pathway
sfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sfum_2578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfu03019
]
Sfum_2578
Messenger RNA biogenesis [BR:
sfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sfum_2578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-ProteinID:
ABK18256
UniProt:
A0LLF4
LinkDB
All DBs
Position
complement(3190710..3192272)
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AA seq
520 aa
AA seq
DB search
MGYVSGILLVLIGLLAGVGLGVLLRQYWLEKRNRQLQEQARNILTDARKEAETIKKEAIL
QAKDSLFQMKAEFERETKESRKEFQNLEKRILQKEENLDKKSEALDKREGVIGKREKVLQ
QQEKELEENTRELHMLIEEQRKKLESLSGISAQQAKEMLARAIENEARHDAALMVKKIET
EARETADRKAKNIISLAIQRYAGDYVAEKTVSVVNLPNEEMKGRIIGREGRNIRAIEAST
GVDLIIDDTPEAVILSGFNPVRREVARVSLERLISDGRIHPARIEEIVEKVNIEIENAIK
ESGEQAAFDVGVHGIHPELIKLLGKLKYRTSYAQNVLQHSREVAFLCGIMAAELGINEKQ
AKRAGLLHDIGKAIDHEMEGPHATLGADLTRRYGEAPPIIHAIAAHHEDVPAEDVLAILV
QAADALSGARPGARKELLETYVKRLEDLERIAGSFPGINKAYAIQAGRELRIIVESGQVN
DADVVLLSRDIAKKIEGELTYPGQIKVTVIRETRAVEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgggctatgtgtccggcatactacttgtcctgatcggtctgctggcgggagtcgggctc
ggagtgctgctccgtcagtactggttggagaaacgaaatcggcaactccaggaacaggca
cgcaatatactcaccgatgcacgcaaggaagcggagaccatcaagaaggaggcgattctc
caggccaaggacagcctctttcaaatgaaggccgagtttgaaagggagaccaaggagagt
cgaaaggaatttcagaacctggaaaaacgcattctccagaaggaggaaaatctggacaag
aagtccgaagccctcgacaagcgtgagggggtgatcggcaaacgggagaaagtcctgcag
cagcaggagaaggaattggaggaaaacacgcgcgagctccatatgctgatcgaagaacag
cggaagaagctcgagagtctctccgggatttccgcccagcaggccaaggaaatgctggca
cgcgccatcgaaaacgaggcgcggcatgacgcggccctgatggtgaagaagatcgaaacc
gaagcacgcgaaaccgcggatcgcaaggccaagaacatcatttcgctggcgattcagcgg
tatgcgggcgactatgtggctgagaagacggtttccgtcgtcaatttgcccaatgaagaa
atgaagggccggatcatcgggcgggaaggccgcaacatccgggccatcgaggcgtccacc
ggggtcgacctcatcatagacgacacgccggaggccgtcatcctttcggggttcaacccc
gtgcgcagggaggtggccagggtctcgctggagcgtcttatttccgatgggcgcattcac
cccgcgaggatcgaagagatcgtcgagaaagtgaacatcgaaatcgagaatgcgatcaag
gaatccggggagcaggccgctttcgacgtgggagtgcacggaatccatcccgaactgatc
aagctgctcggaaagctcaaataccggaccagttacgcgcagaacgtcctgcagcactcc
cgggaggtggctttcctgtgcggcatcatggcggcggaactggggatcaacgagaaacag
gcgaagcgtgcggggttgctgcacgacatcggcaaggccatcgaccacgaaatggagggg
cctcacgccaccctgggcgccgatctgaccaggcgctacggcgaggcgcccccgatcatc
cacgccattgcggctcaccatgaagacgtgcccgcggaagatgtgctcgccatcctcgtc
caggcggccgacgctctttccggtgcacggccgggtgcccgcaaggaactgctcgaaacc
tacgtgaaacggcttgaggacctggagagaatcgccggttccttcccgggaatcaacaag
gcctatgcgattcaggcgggacgggaactgcggatcatcgtcgaaagcggacaggtcaac
gatgccgacgtggtgctgttgagccgggatatcgccaagaagatcgagggcgaactgacg
tatccgggccagatcaaggtgacggtgatacgggagacccgcgccgtcgaatatgccaag
tag
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integrated database retrieval system
