Syntrophobacter fumaroxidans: Sfum_2643
Help
Entry
Sfum_2643 CDS
T00418
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sfu
Syntrophobacter fumaroxidans
Pathway
sfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sfum_2643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfu03019
]
Sfum_2643
Enzymes [BR:
sfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sfum_2643
Messenger RNA biogenesis [BR:
sfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sfum_2643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABK18321
UniProt:
A0LLL9
LinkDB
All DBs
Position
3269361..3270962
Genome browser
AA seq
533 aa
AA seq
DB search
MAYTLVTNLFGCTRRLRSKEERKEREETAPTVSEPEPAASSDTAATAPVADDTAPGERPK
KRRPRRRQGRRSGRKPLPETPLEAGPVETPEESREPEAAEPWDIDQFQVDPEEGKTRFHD
LDLPAPILRGIADAEFRYCTPIQAALLPHTLNGLDAAGRAQTGTGKTAVFIITMLTQFLR
NPAPEGRRKGTPRALVLAPTRELALQIEKETHLLSRHTPFKSVAIFGGMDYEKQKRRLTG
EVIDIVVATPGRLLDFKRQGDLHLSKVEILVIDEADRMLDMGFIPDVQRIIHYTPPKAQR
QTMLFSATLTAEVTRFASQWTRNPVTVEIEPEQVAVDTVNQRVLITTIDEKFTLLFNMIT
RQNLDRVIVFTNRRDQARRLTERLGSYGISCALLSGEVDQKKRVKTLEEFRNGKIRVLVA
TDVAARGLHVEAVSHVFNYNMPMDPEDYVHRIGRTGRAGTSGISVSFASEDDSFLIPALE
KYLGHEIHCEHPDEDMLETLPEPTHTPVAAERPRRSGPYRGRNPRSTGRRKTG
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
ttggcatacaccctggttacgaatctcttcggttgcacccgcaggctgcggagcaaggaa
gaacgcaaagaacgcgaggaaaccgcgccgaccgtgtcggagcctgaaccggccgcctca
tccgacactgcggcaaccgcaccggtcgccgacgacaccgcacccggtgagcgcccgaag
aagcggcgcccgcgccggaggcaaggccgccgctccgggagaaaaccccttcccgaaacg
ccactggaagcaggccctgttgaaactcctgaagaaagccgcgaaccggaggcggccgag
ccctgggacatcgatcaatttcaggtggatcccgaggaagggaagacccgctttcacgac
ctcgatctgcccgcgccgatcctgcgcggcatcgccgacgccgagttccgttactgcacg
cccatccaggcggccctgctgccgcacaccctcaacgggctggatgcggcaggccgcgct
cagacgggcaccgggaaaaccgcggtcttcatcatcaccatgctcacccaattcctgcgc
aacccggcgcccgaaggccgtcggaaaggaactccccgcgcccttgtcctggcgccgacg
cgagagcttgccctgcagatcgagaaggaaacgcaccttctgtcccgccacacgccgttc
aagagcgtggctatattcggcggcatggattacgagaagcaaaagcgccgcctcaccggt
gaggtcatcgatattgtggtggctacccccggacggttgctggatttcaaacggcagggc
gatcttcatctcagtaaggtggaaatcctggtgatcgatgaggccgaccggatgctcgac
atgggtttcatcccggatgtccagcggatcattcactacacgccgcccaaggcgcaacgt
cagactatgctgttcagcgccacgctgaccgccgaggtcacccggttcgcctcccagtgg
acccggaaccccgtgacggtcgagatcgagcccgagcaagtcgcagtggacacggtcaac
cagcgcgtgctcatcaccactatcgatgagaaattcaccctgctcttcaatatgatcacg
cgacagaatctcgacagggtcatcgttttcaccaaccgtcgcgaccaggccaggaggctg
acggaacgcctggggagctacggcatcagctgcgccctgctctcgggggaagtggaccag
aaaaagcgggtcaagaccctggaggaattccggaacggaaagatccgggtgctcgtggcg
accgacgtggccgcccgggggctccacgtggaagccgtgagccacgtgttcaactacaac
atgcccatggatcccgaggactacgtgcacaggatcggtcgaaccgggcgcgcgggaaca
agcggtatatccgtgagcttcgccagcgaggacgactcttttctgatcccggccctggag
aagtacctcggacacgaaatccactgcgaacacccggacgaggacatgctggagactctg
cccgaaccgacgcacacccccgttgccgcggagcgccccaggcggtccgggccttaccgg
ggcaggaaccccagaagcaccggccggagaaaaaccggctga
DBGET
integrated database retrieval system
