Syntrophobacter fumaroxidans: Sfum_3369
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Entry
Sfum_3369 CDS
T00418
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
sfu
Syntrophobacter fumaroxidans
Brite
KEGG Orthology (KO) [BR:
sfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfu03019
]
Sfum_3369
Enzymes [BR:
sfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Sfum_3369
Messenger RNA biogenesis [BR:
sfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sfum_3369
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
AAA_22
SLFN-g3_helicase
DUF3516
Motif
Other DBs
NCBI-ProteinID:
ABK19042
UniProt:
A0LNP0
LinkDB
All DBs
Position
complement(4131753..4134284)
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AA seq
843 aa
AA seq
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MQALEKLDASDVLVTAPTGAGKTYIAVEAIRKVFGRGGKSWYASPLKALSNSKYEEFIAD
FGASNVGILTGDRKENAQAPIIVGTTEILRNQLYDTMHRGEDLEVDLVVLDEAHYLGDED
RGVVWEEVLIYLPPRVKLLLLSATVENAGDICAWLEWLRRSPCSWVNTEERPVPLFPLFV
FPSGELTPLGTRRGLFAKIRGVEPGSFSRNEFPNIPGLMEVLDRANLLPAIFFLKSRADC
DRAISLCGAPRRKSEEVKQFHRRLSGLLDSFPFLRNHQHLSILRETAVGAHHGGQLPHWK
LLLERLMQQGHLRAIFSTSTVAAGVNFPARTVVVLQSDRFNGREFLELTATDLLQMTGRA
GRRGMDEIGFALVVPGPFQNPQLIHDLLKSPPNPITSQIRVNHSMVLNLLLSHAPEEIRT
LFGASLATFQNLHREKDISRELDEARIELDKYIPETACGSVEQLAEIRPRYDALREMRRR
AKKNLRRQTTSGSMGSLLVPGRVFRSRRGTPYIAVAHPQISRRSVEAVRLAEPLRFRRDH
VRTHHVVFHRIMDLGELITPLPSLKNRQEWEALMFEATEHPPRPMRCRPEGEPTMPVPDA
VREINELTVQLAALPCGTCALFAPCLKGTSHPFTAALQRHFEYRARVLTIQDQLWQSFLK
HLRLLGDEGYVDAAGRLTRDGTWASKLRLDQPLLISEGIRRNAFPAEDPELLGALIAPFV
MDRERHGDIQLSSLVWKFPGLAKPFFRMLHSLQPLRERLQAEGFSVPPMPFWATATVYHW
AGGSSWQTVREISGMDEGDLAMLILRTADHLRQIESLSETHPSLAAAARRAIELILREPV
LVE
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggcgctggagaagctcgacgcttccgatgtattggttaccgcgcccaccggggcc
ggaaagacctatatcgccgtcgaggcgatccggaaagtgttcggtcgaggcggcaagagc
tggtacgcatcccccctgaaagcgctttcgaactcgaaatacgaagagtttatagccgat
ttcggcgcatcgaacgtgggaatactcaccggggaccgcaaggaaaatgcgcaggccccg
ataatcgtgggaacgaccgagatcctgcgaaatcaactctacgacaccatgcaccgggga
gaagatctcgaggtcgacctggtggtgctcgacgaagcccactatctcggcgacgaggac
cgcggagtggtctgggaagaggtcctgatctacctgcctccgcgcgtgaagctgctcctg
ctttcggccaccgtcgaaaatgcgggggatatctgtgcatggctcgagtggctgcgccgc
tccccctgctcctgggtcaacaccgaggagagacccgtcccgcttttccccctctttgtc
tttccgtcgggcgagctgactcccctggggacacggcgcgggttgttcgcaaagattcgc
ggcgtggaacccgggtcgttttcacggaacgaattccccaatatccccgggcttatggag
gtgctggaccgcgccaatctcctccccgcgatcttctttctgaagtcgagggccgattgt
gaccgggcaatctccctgtgcggggcgccgcgccgcaaatcggaagaggtgaaacaattt
cacaggaggctgagcgggctcctcgactcgttcccgtttctcagaaaccaccaacacctg
tccatcctccgggaaaccgcggtcggggcgcaccacggcggccaactgccgcactggaag
ctccttcttgaaagactcatgcagcagggacacctgcgggccatcttctcgacatccacg
gtggctgccggagtgaacttccccgcgcgcacggttgtcgtcctgcaaagcgaccggttc
aacggcagggaattcctcgagctcaccgccacggacctgttgcagatgaccggccgagcc
ggacggcgcggaatggatgaaatcggttttgcgctcgtcgttcccggacccttccagaac
ccccaactgatccacgatctgctgaaaagccccccgaatccgatcaccagtcagattcgg
gtgaaccattcgatggtcctgaacctgcttctctcccacgctcccgaggaaatacgcacc
ctgttcggcgcgtccctggccacgtttcagaacctccatcgcgaaaaagacatctcgcgg
gaactcgatgaggcgcgcatcgaactcgataaatatattcccgaaacggcgtgcggatcg
gtggaacaactcgccgagattcgccctcgatacgacgcgttgagggaaatgcggcgaaga
gccaagaaaaacctgaggaggcaaacgacgtccggttccatgggatcattgctggttccg
ggcagagtatttcgcagcaggcggggtaccccctatattgcggtcgcacatccccagatc
tcccgaaggtccgtcgaagcggtacggctggcggagcccctgcgctttcgcagggaccac
gtacggacccatcacgtggtcttccatcgcatcatggacctgggcgagctcatcacgccc
ctgccttccctcaagaaccggcaggaatgggaggcgttgatgttcgaagcgaccgagcat
ccgccgcgcccgatgcgctgccggcccgagggggagccgacaatgcccgtcccggacgcg
gtgcgcgagatcaacgagctgaccgttcaactggcggcgctgccctgcggcacgtgcgcg
ctcttcgccccgtgtctgaaaggcacttcccaccctttcaccgctgcgctgcaacgccac
ttcgaataccgtgcacgcgtgctgaccatccaggatcagctctggcaatccttcctcaag
cacctccgtctcctcggggatgaaggatacgtggacgccgcagggcggctcacccgtgac
ggcacctgggcatcgaaactcaggctggaccagccgctgctcatctcagaagggatccgt
cgcaacgctttccccgccgaagaccccgaactgctgggtgccctcattgcgcctttcgtc
atggaccgggaaaggcacggggacatccagctctcctcgctggtctggaaattcccgggt
ctggccaagccttttttccgcatgttgcacagtctccagcctctgcgggaaagactccag
gccgagggcttctccgttccccccatgcccttctgggctacggcaaccgtctatcactgg
gccggaggatcgtcctggcagaccgtcagggaaatctcgggcatggatgaaggggacctt
gccatgctcatcctgcggaccgccgatcacctccggcagatcgagtccctctcggagaca
cacccatccctggccgccgccgcccgtcgcgccatcgagctgattctccgggaacccgtg
ctggtcgaatag
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