Streptomyces fungicidicus: CNQ36_11830
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Entry
CNQ36_11830 CDS
T07133
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sfug
Streptomyces fungicidicus
Pathway
sfug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNQ36_11830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfug03019
]
CNQ36_11830
03009 Ribosome biogenesis [BR:
sfug03009
]
CNQ36_11830
Enzymes [BR:
sfug01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CNQ36_11830
Messenger RNA biogenesis [BR:
sfug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CNQ36_11830
Ribosome biogenesis [BR:
sfug03009
]
Prokaryotic type
rRNA processing factors
CNQ36_11830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AYL36064
UniProt:
A0A494UZT5
LinkDB
All DBs
Position
complement(2638384..2642406)
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AA seq
1340 aa
AA seq
DB search
MLEPIEPTEGSELNTPSDTLPPRRRRRAASRPAGPPAGADGATGETVAPAIPAAEPAEAL
ESAAGAGKDPEAAAPRRRRVVRRAAAPAGAPESAEAAETVVTAAQAPAGSAPAAEQPAVP
EDAAPPRARRRATRSVTSPTAAAAAGTAEPEQPAPAAEAPAKAEAVAEAPSEDAAPRRTR
RRASRAVTSPEPAAGTAEKAAAPEAAAEAPQAAAETTEAVAEDAAPRRTRRRATRADSAP
AEAQPAAAAAEPEQPAPAAEEAPEAEDEAPRRRRRVVRKAAAGFAEPARPARTTKPAASD
GPEEAETSKRRPARPAVAVFQAPVFAEPRFQTPERAAAEAAAEVTGPAEPEETEETEEAG
ELVQEQPASRRRRRRRGAGDEPEAAAPATRAEDEAEEDEEQAEDHAEGEDHDDSEGAGSR
RRRRRGGRRRRRGDSAESDAEGGDSADASAEQAAQDAEDTAEQVEEDAEDAEDEGRDDSG
SSSSRRRRRRRRRAGDSGGEGESASDDPERTVVKVREPRKASEPSDEVQSIKGSTRLEAK
KQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQHGDRTQIGVLEDGVLVEHYVNK
EQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMGHGPRRIESAL
KSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTIL
KKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIKKKSKNGAGSAPTLLYGEPDMT
VRVVRDIFNEDFSKVVVSGDEAWETVHGYVSHVAPDLAERLSRWTSEVDVFATYRIDEQL
AKALDRKVWLPSGGSLVIDRTEAMIVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQL
RLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQ
GLLESFSETCVHCNGRGVIVHLDQPAAAGGGGKRRKRARAGAAEQPHEHEAAGVETAEQE
AETETAAEVAAEAAEPVALPAPEFVPDEELYSSAAEAEAAATRGRTRRRASRRASAPAGA
PKRETARAGRRGAEEGDRAEAPTAQDVTAAEEIARPVRPEPAAEALAEPAAVEDAVVPEP
AAEEAAPKGRTRRRATRKVSAPAGSPAGAEAAVVTVAEPAPPVAEAPAAEAPKPEETPVE
APAEAEAPARPRRRAVRKAGTSTASEDTAVVVVPSAAAETAPAEEPAQETAGEPSQESAE
EPAAARKTARKAAKKATAKKAAVKKTAAKKTAAKKTTAKKAAAKTTKSAATKTTAKKAAS
KKTAAAAQQPSSSVTASTED
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgatcgagcccaccgagggctccgaactgaacactccgagcgacaccctg
ccgccgcgacggcggcggcgtgccgcctcacgcccggcgggcccgcccgccggggcggac
ggggcgacgggggagaccgtcgcaccggccataccggccgcggagccggccgaggccctg
gagtccgccgcaggggccgggaaggacccggaggcagccgctccgcgacgccgtcgtgtg
gtgcgccgtgccgcggcgcctgccggggcaccggagtcggcggaggccgccgagaccgtc
gtcacggccgcgcaggccccggccgggagcgctccggccgccgagcagcccgccgtcccc
gaggacgccgccccgccccgcgcccggcgccgggcgacccgcagcgtgacgtcaccgacg
gcggccgcggccgccgggaccgccgagcccgagcagcccgcccccgccgccgaggcgccc
gcgaaggctgaggccgtcgccgaggccccctccgaggacgccgctccgcgccgcacccgg
cgccgcgcctcgcgcgccgtgacctcgccggagccggccgccgggacggccgagaaggcc
gcggcccccgaggccgccgccgaggcgccccaggccgccgcggagaccaccgaggccgtc
gccgaggacgccgctccgcgccgcacccggcgccgcgccacgcgggccgactccgcgccc
gccgaggcgcagccggccgccgcggccgccgagcccgagcagcccgcccccgccgccgaa
gaggccccggaggccgaggacgaggccccgcgccgccgtcgccgggtggtccgcaaggcc
gccgccggcttcgccgagcccgcgcgccccgcccggaccaccaagcccgccgcgtccgac
ggaccggaggaggcggagacctcgaagcgccgccccgcgcgcccggccgtcgccgtgttc
caggcgccggtgttcgccgagccccgcttccagaccccggagcgcgccgccgccgaggcg
gccgccgaggtcaccggaccggcggaaccggaggagaccgaggagaccgaggaggccggg
gagctcgtacaggagcagcccgcctcccgccgccgtcgccggcgccgtggcgcgggcgac
gagcccgaggcggccgcccccgcgacccgcgccgaggacgaggcggaggaggacgaggag
caggccgaggaccacgccgagggcgaggaccatgacgacagcgagggcgccggttcgcgc
cgccgccgtcgccgcggcggccgtcgccgccggcgcggtgactccgccgagtccgacgcc
gagggcggcgattccgcggacgcctccgccgagcaggccgcccaggacgccgaggacacc
gccgagcaggtcgaggaggacgccgaggacgccgaggacgagggccgcgacgactccggg
tccagcagcagccgtcgccgtcgccgccggcgtcgccgcgccggtgacagcggtggtgag
ggcgagtcggcctccgacgaccccgagcgcaccgtcgtcaaggtgcgcgagccgcgcaag
gcgtccgagccgtcggacgaggtgcagtccatcaagggctccacgcgtctggaggcgaag
aagcagcgccgccgcgaaggccgcgagcagggccgccgccgggtgccgatcatcaccgag
gccgagttcctggcccgccgtgaggccgtcgagcgcgtcatggtcgtgcgtcagcacggc
gaccgtacgcagatcggcgtcctggaggacggggtgctcgtcgagcactacgtcaacaag
gagcaggcgacctcgtacgtcgggaacgtctacctcggcaaggtgcagaacgtgctgccg
tcgatggaggccgccttcatcgacatcggcaagggccgcaacgccgtgctctacgccggt
gaggtcaacttcgaggcgctgggcatgggtcacggcccgcgccgtatcgagtccgcgctg
aagtcgggccagtcggtcctggtgcaggtcaccaaggacccgatcgggcacaagggcgcc
cgcctcaccagccaggtgtccctcccgggccgttacctcgtgtacgtccccgagggctcg
atgaccggcatcagccgcaagctgcccgacaccgagcgggcccggctgaagaccatcctc
aagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgccgccgagggcgcgagc
gaggacgagctgcgccgggacgtcgagcggctgcaggcgcagtgggaggagatcaagaag
aagtccaagaacggtgccggcagcgccccgacgctgctgtacggcgagccggacatgacc
gtccgggtcgtgcgggacatcttcaacgaggacttctccaaggtcgtcgtcagcggtgac
gaggcgtgggagaccgtccacgggtacgtgtcgcacgtggcgccggacctggccgagcgg
ctgtcccggtggaccagcgaggtcgacgtcttcgccacgtaccggatcgacgagcagctc
gccaaggcgctggaccgcaaggtctggctgcccagcggcggttcgctggtgatcgaccgg
accgaggcgatgatcgtcgtcgacgtcaacaccggcaagttcaccggacagggcggcaac
ctcgaggagacggtcaccaggaacaacctggaggcggccgaggagatcgtgcgccagctg
cggctgcgcgacctcggcggcatcatcgtcatcgacttcatcgacatggtgctggagtcc
aaccgggacctggtgctgcggcgtctgctggagtgcctgggccgggaccgtacgaagcac
caggtcgccgaggtgacctcgctgggcctggtccagatgacccgcaagcgggtcggccag
ggtctgctggagtcgttctcggagacctgcgtccactgcaacgggcgcggtgtcatcgtg
cacctcgaccagccggccgccgccggtggcggcggcaagcgccggaagcgggcgcgggcc
ggcgctgcggagcagccgcacgagcacgaggccgcgggcgtcgagacggccgagcaggag
gcggagacggagacggcggccgaggtcgccgccgaggccgccgagccggtcgcgctgccg
gcccccgagttcgtgccggacgaggagctgtacagcagcgccgccgaggcggaggcggcg
gccacccgtggtcgcacgcgtcgccgggcgagccggcgtgcgtccgccccggcgggcgcg
cccaagcgggagaccgccagggccggccggcgcggagccgaggagggcgacagggccgag
gcgccgacggcgcaggacgtgaccgccgccgaggagatcgcgcgtccggtgcggcccgag
cccgccgccgaggcgctggccgagccggccgccgtcgaggacgcggtggttcccgagccg
gccgccgaggaggccgcgcccaagggccgtacgcgtcgccgggccacccgcaaggtgtca
gcgcccgccggttccccggcgggagctgaggccgcggtggtgacggtcgcggagcccgcg
cccccggtcgccgaggcgccggccgccgaggcgccgaagccggaggagaccccggtcgag
gcgcccgccgaggccgaggccccggcccggccgcgtcgccgcgcggtgcgcaaggcgggc
acgtcgacggcgtccgaggacacggccgtggtggtcgtcccgtccgcggcggcggagacg
gcgcctgcggaggagcccgcgcaggagactgccggggagccctcgcaggagtccgccgag
gagccggccgcggccaggaagaccgcccgcaaggcggccaagaaggccacggcgaagaag
gccgcggtgaagaagacggcggccaagaagaccgccgcgaagaagacgacggccaagaag
gcggcggcgaagaccaccaagtcggccgccaccaagacgaccgcgaagaaggcggcgtcg
aagaagaccgcggcggcggcccagcagccgtcgtcgtcggtgacggcctcgacggaggac
tga
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