Streptomyces fungicidicus: CNQ36_19970
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Entry
CNQ36_19970 CDS
T07133
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sfug
Streptomyces fungicidicus
Brite
KEGG Orthology (KO) [BR:
sfug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfug03016
]
CNQ36_19970
Enzymes [BR:
sfug01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CNQ36_19970
Transfer RNA biogenesis [BR:
sfug03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CNQ36_19970
Prokaryotic type
tRNA splicing ligases
CNQ36_19970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AYL37479
UniProt:
A0A494V2Y7
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All DBs
Position
4372925..4374118
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AA seq
397 aa
AA seq
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MSYVELPGAKVPIRMWTDPATVEEGALQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVRTSLTANDLPGDLFRLRSKIEQAIPVGRGMHDDPVDPF
RFHAFATGGWDGFWERFGGVADAVKFREERATKQMGTLGSGNHFVEVCVDSTDSVWLMLH
SGSRNIGKELAEHHIGIAQKLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
SIMMALLKDVVRKEFKKAKPLFEQEISAHHNYVAEERYEGVDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNTKSFNSASHGAGRRMSRNAAKRRFSTKDLEEQTRGVECRKDSG
VVDEIPSAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtacgtggaactgccgggtgccaaggtgccgatccggatgtggacggacccggcg
acggtggaggagggcgcgctccagcagctgcggaacgtggcgaccctgccgtggatcaag
ggcctggccgtgatgccggacgtgcactacggcaagggggcgacggtcggctcggtcatc
gcgatgcggggcgccgtgtgcccggcggcggtgggcgtcgacatcggctgcgggatgtcc
gcggtgcggacgtccctgacggcgaacgacctccccggtgacctgttccggctccggtcg
aagatcgagcaggcgatcccggtgggccggggcatgcacgacgacccggtcgacccgttc
cgcttccacgccttcgcgaccggcggctgggacggcttctgggagcgcttcggcggggtg
gcggacgcggtcaagttccgcgaggaacgcgccacgaagcagatgggaacactcggatcc
ggcaaccattttgtcgaagtgtgtgtggattcgaccgattctgtctggcttatgctgcac
tccggttcccggaacatcggcaaggagctcgccgagcaccacatcggcatcgcccagaag
ctcccgcacaaccagggcctggtcgaccgcgacctcgccgtcttcgtcgcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgcgaagtacaaccgc
tcgatcatgatggcacttctgaaggacgtggtccgcaaggagttcaagaaggccaagccg
ctcttcgagcaggagatcagcgcgcaccacaactacgtggccgaggagcgctacgagggc
gtggacctgctcgtgacccgcaagggcgcgatccgcgcgggctccggcgagtacgggatc
atcccggggtccatgggcacgggttcgtacatcgtcaagggcctcgggaacaccaagtcc
ttcaactcggcgtcgcacggcgccggtcggcggatgagccgcaacgcggcgaagcggcgc
ttctcgacgaaggacctggaggagcagacgcggggcgtggagtgccgcaaggactccggc
gtcgtggacgagatcccgagcgcgtacaagccgatcgagcaggtcatcgaccagcagcgg
gacctcgtcgaggtcgtcgccaagctgaagcaggtcgtctgcgtcaagggctag
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