Sorex fumeus (smoky shrew): 130016209
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Entry
130016209 CDS
T10594
Symbol
SMARCA2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03082
ATP-dependent chromatin remodeling
sfum04714
Thermogenesis
sfum05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130016209 (SMARCA2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
130016209 (SMARCA2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
130016209 (SMARCA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfum03021
]
130016209 (SMARCA2)
03036 Chromosome and associated proteins [BR:
sfum03036
]
130016209 (SMARCA2)
Transcription machinery [BR:
sfum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130016209 (SMARCA2)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
130016209 (SMARCA2)
Chromatin remodeling factors
BAF complex
130016209 (SMARCA2)
PBAF complex
130016209 (SMARCA2)
GBAF(ncBAF) complex
130016209 (SMARCA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
130016209
NCBI-ProteinID:
XP_055962852
LinkDB
All DBs
Position
Unknown
AA seq
1576 aa
AA seq
DB search
MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHTMPTV
GSVDFPQEGMHQMHKPIDGMHDKGIVEEMHCGSMKSTGMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQPGPLIQGDPQTMSQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQPPPQQQPQPQTQPQQPPQQQQ
ALVSFNRASGPGTELSGSSTPQKLPMPVPSGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQ
PSPILQLQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRT
KATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEK
QQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKE
TERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAK
EKKKRRRRKKKAEESAEGGEPTLGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKA
SQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEEPTKQETEEKIVLDPNSEEVSEKDA
KQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEW
MVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDK
WAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGH
RMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFN
APFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQ
KILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLG
YSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYL
RLDGTTKSEDRAALLKKFNETGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDL
QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERR
AFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRL
MEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNL
EEMEEEVRLKKRKRRRNVEKDPAKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTV
INYKDRCTVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKE
RIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESED
ETNEEEEEEDEEESESEAKSVKVKIKLNKKEEKGRDKGKGKKRPNRGKTKPVVSDFDSDE
EQDENEQSEASGTDDE
NT seq
4731 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcccacagaccctggcgcaatgccccacccagggccttcgccagggccggga
ccctctcctggaccaattctaggacctagtccagggccaggaccatctccaggttcagtc
cacagtatgatggggccaagtcctggacctccaagtgtctcacacactatgccaacagtg
gggtctgtggacttcccacaggaaggcatgcatcaaatgcataagcccattgatggtatg
catgacaagggcatcgttgaagagatgcattgtggatccatgaagagcactggaatgcga
ccaccgcacccaggaatgggccctccccagagccccatggatcagcacagccaaggctac
atgtcaccacacccatccccgctgggagccccagagcacgtctccagcccgatgtccgga
gggggcccgaccccaccccagatgccgccgagccagccagggcccctcatccagggtgat
ccacagacgatgagccagcccaatcgaggaccctcgccgttcagccctgtccagctgcat
cagctgcgagctcagattttggcttacaaaatgttggcgcggggccagcccctccccgaa
accctgcagcttgcagtccaggggaaaaggacgttgcccggaatgcagcagcagcagccc
cctccccagcagcagccccagccccagacgcagccacagcagccaccacaacagcagcag
gccctcgtcagcttcaacagagcatcgggccctgggaccgagctgagtggctccagcacc
ccacagaagctcccgatgcccgtgcccagtggccggccctcaccggcaccccctgccgca
gcacagcctccagcagcagccgtccctggcccctccgtgccgcagcccgccccgggccag
ccgtcacccatccttcagctgcagcagaagcagagccggatcagccccattcagaagcct
caaggcctggaccccgtcgagattctgcaagagcgggaatacagacttcaggctcgcata
gctcacaggatacaagaactggaaaatctgcctggctccttgccaccagatttacgaacc
aaagcaactgtggaactgaaggcacttcgattactcaatttccagcgtcagctgagacag
gaagtggtggcctgcatgcgccgggacaccaccctcgaaacggccctcaactccaaggcc
tacaagcgcagcaagcggcagaccctgcgtgaggcccgcatgacggagaaactggagaag
cagcaaaagatcgagcaggagaggaagcgacggcagaagcaccaggaatacctgaacagt
atcttgcaacatgcaaaagattttaaggagtatcatcggtctgtggccgggaagattcag
aagctttccaaagcggtggctacttggcatgccaacacagagagggaacaaaagaaagaa
actgagcggatcgaaaaggagagaatgcggagattgatggcagaagatgaagagggctac
cgaaagctgatagatcaaaagaaagacaggcgcttagcttaccttttgcaacagactgat
gagtacgtggccaacttgaccaacctggtgtgggaacacaagcaagcacaagccgccaaa
gagaagaagaagaggaggaggaggaagaagaaggctgaagagagtgcggagggaggagag
cctaccctgggaccagatggagagcccattgatgaaagcagtcagatgagtgaccttcct
gtcaaagtgactcacacggaaactggaaaggtcctatttgggccagaagcccctaaagca
agtcagctggatgcctggttggaaatgaatcctggttatgaagttgcacccagatctgac
agcgaagagagtgattctgattatgaggaggaggatgaggaagaagagcccaccaagcag
gagaccgaagagaaaatagtcctggatccaaacagtgaagaagtttccgagaaggatgcc
aagcagattattgagacggccaagcaagacgtggatgatgaatacagcatgcagtacagt
gcccgaggttcccagtcctactacacggtggcccatgccatctccgagcgggtggagaag
cagtcagccttgctcattaatggaaccctcaagcactatcagctccagggcctcgaatgg
atggtttccctgtataataacaatttgaacggaatcttagctgatgaaatggggctagga
aagaccatccagaccattgcactcatcacgtatctgatggaacacaaaagactcaatggc
ccctatctcatcatcgttcccctttcgactctttctaactggacatatgaatttgacaaa
tgggctccttctgtggtgaaaatttcatacaaggggacccctgctatgcgtcgctctcta
gttcctcagctacggagtggcaaattcaacgtcctcttgactacttacgagtacattata
aaagacaagcacattcttgcgaagattcggtggaaatacatgatcgtggatgagggccac
cgaatgaagaatcaccactgcaagctgactcaagtcctgaacactcactatgtggccccc
aggagaatcctcttgaccgggaccccactgcagaataagctccctgaactctgggctctc
ctcaacttcctcctccccacgatttttaagagctgcagcacatttgagcagtggtttaat
gctccttttgccatgactggagaacgggtggacttaaatgaagaagaaactatactgatc
atcaggcgtctgcataaggttttgaggccttttttgctgaggagactgaagaaagaagtg
gaatcacagcttcccgaaaaagttgaatatgtgatcaaatgtgatatgtcagctctgcag
aagattctgtatcgccacatgcaagccaagggcatcctcctcacagacggttccgagaaa
gataagaaggggaaaggaggtgcaaagacgcttatgaacactatcatgcaattgagaaaa
atttgcaatcacccgtatatgtttcagcacatcgaggaatcctttgctgaacacctgggc
tattcaaatggagtcatcaatggggctgagctgtatcgggcctcaggaaagtttgagcta
cttgatcgtattctgcccaaattgagagcgactaatcaccgcgtgctgcttttctgccag
atgacgtccctcatgaccatcatggaggattactttgcttttcggaacttcctttacctg
cgccttgatggcaccaccaagtctgaagatcgtgctgctttgctgaagaaattcaacgaa
actgggtcccagtatttcattttcttactgagcaccagagctggaggcctcggcttaaat
cttcaggcagcggatactgtggtcatctttgacagcgactggaatcctcatcaggatctg
caggcccaggaccgagctcatcgcattggacaacagaatgaggtccgggtcctgaggctc
tgcacggtgaacagtgtggaagagaagatcctggcagctgccaagtacaagctgaatgtg
gaccagaaagtgatccaggcgggcatgtttgatcaaaaatcttcaagccacgagcggaga
gcattcttgcaggccattttagagcatgaggaggagaatgaggaagaagacgaagtgccg
gatgacgagactctgaaccagatgattgcgcgccgagaagaggaatttgaccttttcatg
cgcatggacatggaccggagacgggaggatgcccggaaccccaagcggaagcctcgcttg
atggaggaagatgaactgccctcctggatcatcaaagacgatgccgaggtggagaggctg
acctgtgaagaggaggaagagaaaatattcggtagagggtctcgccagcgccgggatgtg
gactacagcgatgccctcacggagaaacagtggctgcgggccattgaagacggcaatttg
gaagaaatggaggaggaagtacggcttaagaagcggaaaagacgaagaaatgtggaaaaa
gaccctgcgaaggaagatgtggaaaaggctaaaaagagaagaggccgccctccagctgag
aaactctcgccaaatccccccaaactgacaaagcagatgaacgccatcatcgatactgtg
ataaactacaaggacaggtgtaccgtggagaaggtgcccagtaattctcagttggaaata
gaaggaaacagttccgggcgacagctcagtgaagtcttcattcagttaccttcgaggaaa
gaattaccggaatattatgaattaatcaggaagccagtggatttcaaaaaaataaaggaa
agaatccgtaatcacaagtaccggagcttgggtgacctggagaaagatgtcatgcttctc
tgtcacaatgcccagacgttcaacttggagggatcccagatctacgaagactccattgtc
ctgcagtcggtgtttaagagtgctcggcagaagattgccaaagaggaagagagtgaggat
gaaaccaatgaggaggaggaagaagaagatgaagaggagtcggagtctgaggcaaaatct
gttaaggttaaaatcaagctcaataagaaagaggagaaaggtcgggataaaggaaaaggc
aagaaaaggccaaatcgaggaaaaaccaaacctgtagtgagcgattttgacagtgatgaa
gagcaggatgaaaatgaacagtccgaagcaagcggtactgacgatgagtga
DBGET
integrated database retrieval system
