Sorex fumeus (smoky shrew): 130016699
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Entry
130016699 CDS
T10594
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04612
Antigen processing and presentation
sfum05145
Toxoplasmosis
sfum05152
Tuberculosis
sfum05164
Influenza A
sfum05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
130016699 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
130016699 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
130016699 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
130016699 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
130016699 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sfum01001
]
130016699 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sfum04054
]
130016699 (CIITA)
Enzymes [BR:
sfum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
130016699 (CIITA)
Protein kinases [BR:
sfum01001
]
Serine/threonine kinases: Other
TAF1 family
130016699 (CIITA)
Pattern recognition receptors [BR:
sfum04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
130016699 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
130016699
NCBI-ProteinID:
XP_055963409
LinkDB
All DBs
Position
Unknown
AA seq
1090 aa
AA seq
DB search
MELGTLESSYLDLLNSNADPMQLYHLCDHLDLAGEETDICSEPDKDTINCEQLHGLFCDI
EDDEETREAYNSIADLDSYIFQDAQPDSWSRDAFSKHMGVEDSAGDSGKALEEAGQRGPK
RSCPEEVLPADPKHRKLVPELLPQPPLVPPGLLSEEPAFRQSPPEAVLVPVLPLPTDSPT
TCLHLQAGPLQLIPTQPQTFWQISGTGAGTPILIYQSQMPQAGRKAPPCTPGIQSLPESP
GRPGSTSPFAPSASDLPGLPEPTLTSQAPTAAVASPEDAATRSPGPAEASKPPTWSESVE
RFQRSLRDKYQAEPLGPEGFLVEVDLVRARLERSSIKSQERELAILDWTERQPARGGLAA
ILLAPGARRRPQDTQVIAALGKAGQGKSLWVRSVARAWASGQLPQFDFVFLLRGHCLDRL
GDPCRLQDLLSLAASQPLDAEVLDHVVKRPHRVLLIWDAFEELEAQDGPPHGASGHAWTE
PCSPRVLLAGLFQRKLLRGCTMLLAARPRGRLALSLSKADALFEVAGFSARQAEAYVRRH
WAHRDRPELQDEALRLLHAHPFLLGHCRIPAACQAVCRLAETLVGQAEGAPLPSTLTGLY
VGLLGPAVRGSPPGALEELARLAWELGRQHHSTLRAEQLPSAELRAWAGAAGLLQPVPGS
HEAELAFPSLLMQCFLAAVWLARSPHVKDKELPQYLALTPRKKRPYDNWLEAVPRFLAGL
VFQPPAHGLAALVGPVAATVSGRKQKMLSRYLKRLQPGLLPAGRLLELLHCAHEAEDPGL
WEHALHGLPAHLGFPGTRLAPPDVHVLARALKAAGRDFTLDIRSTGIDPPGLATLVGLSC
VSCVRAALSDAVALWRSLRQQGQTGLLRAAEDKFTIEPFKVESPKDVEDLIDLVQLQRAR
GTPGDAEPGELPAVRGLRKLEFALGPVRGPQAFPRLVGILEAFSSLRYLDLDSLSENKIG
DDGVTLLSAAFPRLKALETLNLSQNSITDVGACKLAEALPALAASLLRLSLYNNCICDKG
AQSLAHVLPEMGTLQELDVQYNKFTASGAQQLAASLKKSPQVKRLALWTPTIPFGVHEHL
QLLDSRISLR
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atggagctggggaccctagagagcagctacctggacctcctcaacagcaatgctgacccc
atgcagctgtaccacctctgtgaccacctggacctggctggagaggagacggacatctgc
tcagaacccgacaaggacaccatcaactgtgagcagctccatggtctcttttgtgacata
gaagatgacgaagagaccagggaagcttataacagtattgcggacctggattcctacatc
ttccaggacgcccagccagacagctggagcagagatgccttcagcaagcacatgggcgtg
gaagacagcgcgggagacagcgggaaggccctggaggaggccgggcagcggggcccaaag
agatcctgcccggaggaggtgctgcccgcagaccccaagcaccggaagctggtcccggag
ctcctgccccagccccccctggtcccgcctggcctgctgagcgaggagcccgcatttcgc
cagagcccaccggaggccgtcctggtgccagtgctcccactccccaccgactccccgacg
acgtgcctgcatctccaagccggaccccttcagctcatccccacgcagccccagacgttc
tggcagatctcggggaccggagcaggcacccccatcctcatctaccaaagtcagatgcct
caggcgggccgcaaagcccctccctgcacccccggcatccagagcctccccgagtccccg
ggccggccaggctccaccagccccttcgctccgtctgcctccgaccttccgggcctgccc
gagcccaccctgacgtcgcaggcccccaccgcagctgttgcttccccagaggatgcggcc
acccgcagccccggcccggcagaggccagcaagcccccaacatggtctgagagtgtggag
cggttccagcgctcgctgcgggacaagtaccaggcggagccgctgggcccggaaggcttc
ctggtggaggtggacctggtgagggcacggctggagaggagcagcatcaagagccaggag
cgggagctggccatcctggactggaccgagcggcagccggcccgtggagggctggccgcc
atcctgctggcccctggggcccgccggcggccgcaggacacgcaggtgatcgctgcgctg
ggcaaagccggccaggggaagagcctgtgggtgcggagcgtggcccgcgcctgggccagc
ggccagttgccccagttcgacttcgtctttctcctccgcggccactgcctggaccgtctg
ggcgacccgtgccgcctgcaggacctgctgtccctcgcggcctcgcagccactggacgcc
gaggtcctggaccacgttgtgaagcggccacaccgcgtcctgctcatctgggacgcgttc
gaagagctggaagcccaggacgggcccccccacggtgcgagtggacacgcgtggacggag
ccctgctcgccgcgggtgctgctggccggcctcttccagcgcaagctcctgcgaggttgc
accatgttgctggccgcccggccccgcggccgcctggccctcagcctcagcaaggccgac
gcgctgttcgaggtggccggcttctccgcccggcaggccgaggcctatgtgaggcgccac
tgggcgcaccgggacaggccggagctccaggacgaggccctgcggctcctccacgcacac
cccttcctgctcggccactgccgcatccccgcggcgtgccaggccgtgtgccggctcgcg
gagaccctcgtggggcaggcggagggggccccgctgccctccacgctcactggactctac
gtggggctcttgggcccagccgtccgcggcagcccaccgggggccctggaggaactggcc
aggctggcctgggagctgggccgccagcaccacagcaccctgcgggccgagcagctcccg
tcggccgagctcagggcctgggcaggggctgcggggctcctgcagccggtgccgggctcc
cacgaggctgagctggccttccccagcctcctcatgcagtgcttcctggcggccgtgtgg
ctggcccggagcccccacgtcaaggacaaggagctgccgcagtacctggccttgacgccc
aggaagaagagaccctacgacaactggctggaggccgtgccccgcttcctggccgggctg
gtcttccagccgcccgcccacggcctggccgcactggtggggcccgtggcggccaccgtg
agcggcaggaagcagaagatgctgagccggtacctgaaacgcctgcagcccgggctgctg
ccagccgggcggctgctggagctcctgcactgtgcccacgaggcggaggaccccggcctc
tgggagcacgccctgcacgggctccccgcccacctcggcttcccaggcacccgcctggcg
ccccccgatgtgcacgtgctggcccgggccctgaaggccgccggccgtgatttcaccctg
gacatccgcagcacgggcattgaccccccgggcctggccaccctcgtgggactcagctgc
gtctcctgtgtcagggctgccttgagcgacgcggtggcgctgtggcggtctctgcggcag
cagggacagaccgggctgctgcgggcggcagaggacaaattcaccatcgaacccttcaag
gtcgagtccccgaaggacgtggaggacctgatcgacctcgtgcagctgcagagggcccga
gggacccccggggacgccgagccaggggagctcccggctgtccggggcctgaggaagctg
gagtttgcgctgggccccgtgcggggtccccaggccttccccagactggtcgggatcctg
gaggccttctcctcccttcggtacctggacctggactcgctgagtgagaacaagatcggg
gacgatggagtcactctgctctcggccgccttcccccggctgaaggccctggagacgctc
aacctgtcccagaacagcatcaccgacgtgggcgcctgcaagctggcggaggcgctgccc
gccctggccgcctcccttctcaggctgagcttgtacaataactgcatctgcgacaaggga
gctcagagcctagcccacgtgctgcccgagatggggaccctccaggagctggatgtccag
tacaacaagttcacagcgtcgggcgcgcagcagctggccgccagcctgaagaagagcccg
caggtgaagaggctggcgctgtggacacccaccatcccattcggtgtccatgagcacttg
caactgctggactcccggatcagcctgaggtga
DBGET
integrated database retrieval system
