Sorex fumeus (smoky shrew): 130016872
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Entry
130016872 CDS
T10594
Symbol
DSCAML1
Name
(RefSeq) LOW QUALITY PROTEIN: cell adhesion molecule DSCAML1
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
sfum Sorex fumeus (smoky shrew)
Brite
Cell adhesion molecules [BR:
sfum04515
]
Immunoglobulin superfamily
DSCAM family
130016872 (DSCAML1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
130016872
NCBI-ProteinID:
XP_055963552
LinkDB
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Position
Unknown
AA seq
2053 aa
AA seq
DB search
MWLVTFLLLLDSFRKARPEDVGSSLYFVNASVQHVTFSSSVGVVVPCPAAGSPSAALRWY
LATGDDIYDVPHIRHVHANGTLQLYPFSPSAFNSFIHDNDYFCTAENAAGKIRSPDIRVK
AVFREPYTVRVEDQRSMRGNVAVFKCLIPSSVQEYVSVVSWEKDTVPIAPENRFFITAHG
GLYISDVQKEDALSTYRCITKHKYSGETRQSNGARLSVTDPAESVPTILDGFHSQEVRAG
LTVELPCTASGYPLPAIRWLKDGRPLPADSRWTKRITGLSISALRAEDSGAYICEVTNTF
GSAEVTGTLTVVDPLHVTLTPKKLKTGIGSTVILSCALMGSPEFSIRWYRNTELLRPDEA
VSIRGLSNETLLIASAQKSHSGAYQCFATRKAQTAQDFAIIVLEDGTPRIVSSFSEKVVN
PGEQFSLMCAAKGAPPPTVTWALDDEPLERDSSHRTSQFTMSDGTTISHMNVTGPQIRDG
GVYRCTARNSVGSAEYQARINVRGPPSIRAMRNITAVAGRDTLINCRVIGYPYYSIKWYK
DALLLPDNHRQVVFENGTLKLSDVQKGMDEGEYLCSVLIQPQLSISQSVHVAVKVPPLIQ
PFEFPPASIGQLLYIPCVVSSGDMPIRITWRKDGQVIISGSGVTIESKEFMSSLQISSVS
LKHNGNYTCIASNAAATVSRERQLIVRVPPRFVVQPNNQDGIYGKAGVLNCSVDGYPPPK
VMWKHAKGSGNPQQYHPVPLTGRIQVLPNSSLLIRHVLEEDIGYYLCQASNGVGTDISKS
MFLTVKIPAMITSHPNTTIAIKGQAKELNCTARGERPIIIRWEKGDTVIDPDRVMRYAIA
TKDNGDEVVSTLKLQPADRGDSVFFSCHAINSYGEDRGLIQLTVQEPPDPPELEIREVKA
RSMNLRWTQRFDGNSIITGFDIEYKNKSDSWDFKQSTRNISPTINQANIVDLHPASVYSI
RMYSFNKIGRSEPSKELTVSTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIR
GYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSE
INATTLEDVPSQPPENVRALSITSDVAVISWSEPPRSTLNGVLKGYRVIFWSLYVDGEWG
EMQNITTTRERVELRGMEKFTNYSVQVLAYTQAGDGVRSGVLYIQTKEDVPGPPAGIKAV
PSSASSVVVSWLPPAKPNGVIRKYTIFCSSPGSGQPAPSEYETSPEQLFYRIAHLNRGQQ
YLLWVAAVTSAGRGNSSDKVTIEPAGKAPAKIISFGGTVTTPWMRDVRLPCNSVGDPAPA
VKWTKDSEHLPIPTSMDGHRLIHTNGTLLLRAVRAEDSGYYTCTATNTGGFDTIIVNLLV
QVPPDQPRLTVSKTSASSITLTWIPGDNGGSSIRGFVLQYSVDNSEEWKDVFISSGERAF
KLDGLQCGTWYKVKLAAKNSVGSGRISEIIEAKTHGREPSFSKDQHLFTHINSTHARLNL
QGWNNGGCPITAITLEFRPKGAWAWQGLRANSSAEVFLTELREATWYELRMRACNSAGCG
NETAQFATLDYDGSTIPPIKSAQGEGDDVKKLFTIGCPVILATLGVALLFIVRKKRKEKR
LKRLRDAKSLAEMLISKNNRSFDTPVKGPPQGPRLHIDIPRVQLLIEDKEGIKQLGDDKA
TIPVTDAEFSQAVNPQSFCTGVSLHHPALIQSSGPLIDMSDIRPGTNPVSRKNVKSTHST
RNRYSSQWTLTKCQASTPARTLASDWRTVGSQHGVTVTESDSYSASLSQDTDKGRNSMVS
TESASSTYEELARAYEHAKLEEQLQHAKFEITECFVSDSSSDQMTTGTNENADSMTSVST
PSEPGICRFTASPPKPQDADRGKNVAVPIPHRANKSEYCNLPLYPKSEAFFRKSEAREPC
PLLPPREASVRNLPRPYHPPARHLTLDTASKPLGLPHAGAPAAASTATLPQRTLAMPAPP
SGTAPPAPGPAPAEPPPAPSAAPPAPSTEPPRPGGPHTKMGGSRDSLLEMSTSGVGRSQK
QGAGAYSKSYTLV
NT seq
6162 nt
NT seq
+upstream
nt +downstream
nt
atgtggctggtaactttcctcctgctcctggactctttccgcaaagcccgccccgaggat
gtcggcagcagcctctactttgtgaatgcctcggtgcagcacgtgaccttctccagctcc
gtgggcgtggtggtgccctgcccggccgccggctcccccagcgcggcccttcgatggtac
ctggccacgggggacgacatctacgacgtgccgcacatccggcacgtgcacgccaacggc
acgctgcagctctaccccttctcgccctccgccttcaacagcttcattcacgacaatgac
tacttctgcaccgcggagaatgcggccggcaagatccgcagcccggacatccgcgtcaaa
gcagttttcagggaaccctacacggtccgggtggaggatcaaaggtcaatgcgtggcaac
gtggccgtcttcaagtgcctcatcccctcctccgtgcaggaatacgtgagcgtggtgtcc
tgggagaaggacacggtccccatcgccccagaaaacaggttttttatcactgcccacggc
gggctgtacatctccgacgtccagaaggaggacgccctgtccacctaccgctgcatcacc
aagcacaagtacagcggggagacgcggcagagcaacggtgcccgcctctccgtgacagat
cctgccgagtccgtccccaccatcctggacggcttccactcccaggaggtgagggccggc
ctcacagtggagctgccctgcacggcctccggctacccgctcccggccatccgctggctg
aaggacggccggcccctcccggccgacagccgctggaccaagcgcatcacagggctgagc
atcagtgccctgcgggctgaggacagcggcgcctacatctgcgaggtcaccaacaccttc
ggctctgccgaggtcaccggcaccctcacggtggtcgacccgcttcacgtgaccctgacc
ccaaagaagctgaagacgggcatcggcagcactgtcatcctctcgtgcgcgctcatgggc
tccccagaattctccatccgctggtaccgcaacacagagctgctgaggcctgacgaggcc
gtgtccatccgcgggctcagcaacgagactctgctcatcgcatctgcccagaagagccac
tccggggcctaccagtgctttgctacccgcaaggcccagacggcccaggacttcgccatt
attgtactggaggatggcacgccccgcatcgtctcgtccttcagtgagaaggtggtcaac
cctggggagcagttctcgctgatgtgtgcggccaagggtgccccgccccccaccgtcacc
tgggcgctggacgatgagcccctggagcgggacagcagccaccgcaccagccagttcacc
atgtcggacggcaccaccatcagccacatgaacgtcacaggcccccagatccgtgacggg
ggcgtgtaccggtgcacggcgcggaactcggtgggcagtgctgagtaccaggcgcgaata
aacgtaagaggaccccccagcatccgggcgatgaggaacatcaccgcggtggccgggcgg
gacaccctgatcaactgcagagtcatcggctacccctactactccatcaagtggtacaag
gacgcgctgctgctgcccgacaaccaccgccaggtggtgttcgagaacggcaccctgaag
ctcagcgacgtgcagaagggcatggacgaaggcgagtacctgtgcagcgtgctcatccag
ccccagctctccatcagccagagcgtgcatgtggccgtcaaagtgccccctctcatccag
cccttcgagttcccgcccgcctccatcggccagctgctgtacatcccctgcgtggtgtcc
tcgggggacatgcccattcgcatcacgtggagaaaggacggccaggtgatcatctcgggc
tcgggcgtgaccatcgagagcaaagagttcatgagctccctgcagatctccagcgtctcc
ctcaagcacaacggcaactacacctgcatcgccagcaacgcggctgccacggtcagcagg
gagcggcagctgatcgtccgagtgcccccccggtttgtggtccagcccaacaaccaggat
ggcatctatggcaaggctggggtgctcaactgctctgtggatggctaccccccacccaag
gtcatgtggaagcatgccaaggggagcgggaacccccagcagtatcacccggtgcccctc
accggccgcatccaggtgctgcccaacagctcgctgctgatccgccacgtcctggaagag
gacatcggctactacctctgccaggccagcaacggcgtgggcacggacatcagcaagtcc
atgttcctcacggtcaagatcccggccatgatcacgtcccatcccaacaccaccatcgcc
atcaagggccaggccaaggagctgaactgcacggcgcgcggtgagcggcccatcatcatc
cgctgggagaagggggacacggtcatcgaccccgaccgcgtcatgcgctacgccattgcc
accaaggacaatggcgacgaggtggtgtccacgctgaagctccagccggcggaccgcggg
gattccgtgttcttcagctgccatgccatcaactcctacggggaggatcggggcctgatc
cagctcaccgtccaagagccccccgaccccccggagctggagatccgggaggtgaaggcc
cggagcatgaacttgcgctggacgcagcgtttcgacgggaacagcatcatcactggtttt
gacattgagtacaagaacaagtcagattcctgggacttcaagcagtccacgcgcaacatc
tcccccaccatcaaccaggccaacatcgtggacttgcacccggcgtccgtgtacagcatc
cgcatgtactccttcaacaagatcggccgcagcgagccgagcaaggagctcaccgtcagc
acggaggaggcagctcctgatggcccccccatggatgtcaccttgcagccagtgacgtca
cagagtatccaggtgacctggaaggcccccaagaaggagctgcagaacggcgtgatccgg
ggctaccagattggctaccgggagaacagccctggcagcaacgggcagtacagcatcgtg
gagatgaaggccacaggggacagcgaggtctacaccctggacaacctcaagaagttcgcc
cagtatggggtggtggtccaggccttcaaccgggccggcacggggccctcatccagcgag
atcaatgccaccacgctggaggacgtgcccagtcagccccccgagaacgtgcgagccctg
tccatcacctccgatgtggccgtgatctcgtggtcggagcccccgcgcagcaccctcaat
ggcgtcctcaaaggatacagggtcatcttctggtccctctacgtggacggtgaatgggga
gagatgcagaacatcaccacgacgcgggagcgggtggagctgcggggcatggagaagttc
accaactacagcgtccaggtgctggcctacacgcaggcgggcgatggagtgcgcagcggg
gtcctctacatccagaccaaggaggacgttccaggtccccccgccggcatcaaagccgtc
ccttcatccgccagcagcgtggtggtctcctggctgccgcccgccaagcccaacggggtc
atccgcaagtacaccatcttctgctccagccccggctctggccagccggcgcccagcgag
tacgagaccagcccagagcaactgttctatcgcatcgcgcacctgaaccgcgggcagcag
tacctgctgtgggtggccgccgtcacctcggccggccggggcaacagcagcgacaaggtc
accatcgagcccgctggcaaggcccctgccaagatcatctcgttcgggggcaccgtgacg
acgccgtggatgagagacgtgcggcttccctgcaactcggtgggcgacccggcgcctgct
gtgaagtggaccaaggacagcgagcacctgcccatccccacatccatggacgggcaccgg
ctcatccacaccaacggcacgttgctgctgcgtgcggtgagggccgaggactcgggctac
tacacctgcaccgccaccaacaccggcggcttcgacaccatcatcgtcaacctcctggtg
caggtgccccccgaccagccccgcctcacggtctccaagacctccgcctcgtccatcacc
ctgacctggatccctggggacaacggcggcagctccatccgcggcttcgtgctgcaatac
tcggtggacaacagcgaggagtggaaggacgtgttcatcagctcgggcgagcgggccttc
aagctggacggcctgcagtgtggcacgtggtacaaggtgaagctggccgccaagaacagc
gtgggctcgggccggatcagcgagatcatcgaggccaagacccacgggcgggagccctcc
ttcagcaaggaccagcacctcttcacgcacatcaactccacgcacgcccgcctcaacctg
cagggctggaacaacggcggctgccccatcacggccatcacgctcgagttccggcccaag
ggcgcctgggcctggcaggggctgcgggccaacagctcggccgaggtcttcctcaccgag
ctgcgcgaggccacgtggtacgagctgcgcatgcgggcctgcaacagcgcgggctgcggc
aacgagacggcccagttcgccacgctggactacgacggcagcaccatcccccccatcaag
tctgcccaaggggagggggacgacgtgaagaagctcttcaccatcggctgcccggtcatc
ctggccacgctgggggtggccctgctcttcatcgtccgcaagaagaggaaggagaagagg
ctcaagcggctccgagatgccaagagtttggcagaaatgctgatcagcaagaacaaccgg
agcttcgacacccccgtgaaggggccgccgcaggggcctcggctacacatcgacatcccc
cgggtccagctgctcatcgaggacaaggagggcatcaagcagctgggagacgacaaggcc
accatccccgtgaccgacgccgagttcagccaggccgtcaacccgcagagtttctgcaca
ggggtgtcgctgcaccacccggccctcatccagagctcagggcccctcatcgacatgtcg
gacatccggccgggcaccaacccggtgtccaggaagaacgtgaagtccacacacagcacc
cggaaccgctactccagccagtggacgctgaccaagtgccaggcgtccacccccgcccgc
acccttgcctctgactggcgcacggtgggctctcagcacggggtgaccgtcactgagagt
gacagctacagcgccagcctctcgcaggacacggacaagggacggaacagcatggtgtcc
accgagagcgcgtcctccacctacgaggagctggcgcgggcgtacgagcacgccaagctg
gaggagcagctgcagcacgccaagttcgagatcaccgagtgcttcgtctccgacagctcc
tcggaccagatgaccacgggcaccaacgagaacgccgacagcatgacgtctgtcagcacg
ccctccgagccgggcatctgccgcttcaccgcctccccgcccaaaccgcaggacgccgac
cggggcaagaacgtggctgtgcccatccctcaccgggccaacaagagcgagtactgcaac
ctcccgctctaccccaagtccgaggccttcttccggaagagcgaggcgcgtgagccctgc
ccgctgctgccgccccgggaggcctccgtgcggaacctgcctcgcccctaccaccccccg
gcccgccacctcaccctggacactgccagcaagcccctgggcctcccgcacgccggggcg
cccgcggccgcctccacggccaccttacctcagaggactctggccatgcccgcgcccccc
tccggcacggcccccccagcccccggccccgcccccgccgagccccctccagcccccagc
gctgcccctccggcccccagcaccgagcccccgcggccggggggtccccacaccaaaatg
gggggttccagggactcgcttctcgagatgagcacgtcaggggtggggaggtcgcagaag
cagggggccggggcctactcgaaatcctacaccctggtgtag
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