Sorex fumeus (smoky shrew): 130017355
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Entry
130017355 CDS
T10594
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130017355 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfum03041
]
130017355 (PRPF6)
Spliceosome [BR:
sfum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130017355 (PRPF6)
Complex C
U5 SnRNP specific factors
130017355 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
TPR_17
TPR_2
ARM_TT21_2nd
T7SS_EccA1_N
TPR_21
Motif
Other DBs
NCBI-GeneID:
130017355
NCBI-ProteinID:
XP_055964016
LinkDB
All DBs
Position
Unknown
AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKSQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRTPRYEKLT
PVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEEDRK
HTWMEDADSCVAHSALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNIAAAQELCEEALRHYEDFPKLWMMKGQVEE
QEGLTERAREAYSQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLW
LESVRLEYRAGLKNIANTLMAKALQECPSSGVLWSEAIFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQREEVRRR
CENAEPRHGELWCAVSKDIANWQRKMGEILVLVAASIKNSF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccgttcctgggcatgcccgcgccgctcggctacgtgccgggg
ctgggccggggcgccaccggcttcaccacccgctcggacatcgggcccgcgcgcgacgcc
aacgaccccgtggacgaccgccatgcgccgcccggcaagaggacggtcggggaccagatg
aagaagagccaggcggcggacgacgacgacgaggacctgaacgacaccaactacgacgag
ttcaatggttatgccgggagcctcttctcgagcggcccttacgagaaagatgacgaggaa
gcggacgctatttacgcagctctagataaaaggatggacgagagaagaaaagagagaagg
gagcagagggagaaagaagaaatcgagaaataccgtatggaacgccctaagatccagcag
cagttttcagatctcaaaaggaagctggcagaggtcaccgaggaggagtggctgagcatc
cctgaagtgggcgatgccaggaacaagcgccagcggaccccacgctacgagaagctcact
cctgttcccgacagtttttttgctaaacacttacagactggagagaaccatacttcagtc
gacccccggcagactcaatttggaggcctcaacacgccctacccaggtggactgaacact
ccctacccgggtggaatgaccccaggactcatgacacccggcacaggggagctggacatg
aggaagatcgggcaagccaggaacaccttgatggacatgaggctgagccaggtgtctgac
tcagtgagtgggcagactgttgttgaccccaaaggctacctgacagacctgaactccatg
attccaacccatggtggggacatcaatgacatcaagaaagcacggctgctcctcaagtct
gttcgggagacgaaccctcatcacccaccagcctggattgcgtcagctcgcttggaggag
gtcaccgggaagctgcaagtagctcgcaaccttatcatgaaggggacggaaatgtgtccc
aagagtgaagacgtttggctggaagctgccaggttgcagcctggggacacagccaaggct
gtggtggcccaggccgtacggcacctcccacagtctgtcaggatctacatcagagcagca
gagctggagacagacatccgcgccaagaagcgggttcttcggaaagcccttgagcatgtg
ccgaactccgttcgcttgtggaaggcggccgttgaactggaagagccggaagatgctcgg
atcatgctcagccgtgctgtggagtgctgccccactagtgtggagctctggcttgctctg
gcgaggctcgagacctacgagaatgcccgcaaggtcttaaataaggcccgagagaatatc
ccgacagaccggcacatctggatcacagctgccaagttggaggaagccaacgggaacacc
cagatggtggagaagatcatcgaccgtgccatcacctcgctccgggccaatggcgtggag
atcaaccgtgagcagtggattcaggatgccgaggagtgtgacaaggctgggagtgtggcc
acctgccaggcagtcatgcgtgctgtgatcggcatcgggatcgaggaggaggaccggaaa
cacacgtggatggaggatgcagacagttgcgtggcccacagtgccctggagtgtgcgagg
gccatctacgcctacgccctgcaggtcttccccagcaagaagagtgtgtggctgcgcgca
gcctattttgagaagaaccatggcaccagggagtccctggaagcgcttctgcagagggcc
gtggcccactgccccaaagcggaggtgctgtggctcatgggggccaagtccaagtggctg
gcaggggatgtgcccgcagcaaggagcatcctggctctggccttccaggccaaccccaac
agtgaggagatctggctggcggccgtgaagctggagtcggagaacaacgagtacgagcgt
gccaggaggctgctggccaaggcacggagcagcgcgcccaccgccagggtgttcatgaag
tcagtgaagctggagtgggtgctgggcaacatcgccgccgcccaggagctctgcgaggag
gcgctgcggcactacgaggacttccccaagctctggatgatgaaggggcaggtggaagag
caggaggggctgacggagcgcgcgcgggaggcctacagccaggggttgaagaagtgtcct
cactccacaccgctgtggcttctgctgtcgcggctggaagagaagatcgggcagttgacc
cgggcgcgggccattctggagaagtctcgcctgaagaatcccaagaaccctggtctgtgg
ctggagtccgtgaggctggagtaccgtgccgggctgaagaacattgccaacacactcatg
gccaaggcactgcaggagtgccccagttccggtgtcctgtggtctgaggccatcttcctg
gaggcccggccccagaggaagaccaagagtgtggacgccctgaagaagtgtgagcacgac
ccccatgtgctgctggcagtggccaaactgttctggagtgagcggaagatcaccaaggcc
cgggagtggttccaccgcacagtgaagatcgactctgacctgggggatgcctgggccttc
ttctacaagttcgagctgcagcacggcacagaggagcaacgggaggaggtccgccggcgc
tgtgagaacgcggagccgcggcacggggagctgtggtgcgccgtgtccaaggacatcgcc
aactggcagaggaagatgggggagatccttgtgctggtggcagccagcatcaagaatagc
ttctga
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