Sorex fumeus (smoky shrew): 130017606
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Entry
130017606 CDS
T10594
Symbol
HDAC4
Name
(RefSeq) histone deacetylase 4 isoform X1
KO
K11406
histone deacetylase 4/5 [EC:
3.5.1.98
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04371
Apelin signaling pathway
sfum04613
Neutrophil extracellular trap formation
sfum05034
Alcoholism
sfum05203
Viral carcinogenesis
sfum05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
130017606 (HDAC4)
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
130017606 (HDAC4)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
130017606 (HDAC4)
05203 Viral carcinogenesis
130017606 (HDAC4)
09165 Substance dependence
05034 Alcoholism
130017606 (HDAC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sfum03036
]
130017606 (HDAC4)
Enzymes [BR:
sfum01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
130017606 (HDAC4)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
130017606 (HDAC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
HDAC4_Gln
Oxidored_nitro
Motif
Other DBs
NCBI-GeneID:
130017606
NCBI-ProteinID:
XP_055964267
LinkDB
All DBs
Position
Unknown
AA seq
1101 aa
AA seq
DB search
MCRGDPGAPILPHIASSFLPRRGAHAAMSSQGHPDGISGRDQPVELLSPARVGHMPGPVD
VASALPLQVAPPAVPMDLRLDHPFSLPVAEPGLREQQLQQELLALKQKQQLQRQILIAEF
QRQHEQLSRQHEAQLHEHIKQQQELLALKHQQELLEHQRKLERHRQEQELEKQHREQKLQ
QLKNKEKGKESAVASTEVKLKLQEFVLNKKKALAQRSLNHCITSDPRYWYGKTQHSSLDQ
SSPPQSGASASYQHPLLGMYDAKDDFPLRKTASEPNLKLRSRLKQKVAERRSSPLLRRKG
GPVVTALKKRPLDVPDSACSSAPGSGPSSPNNSSGNVSTENGLAPTVPSVPAEAGLAHRL
VGREAAPLPLYTSPSLPNITLGLPATGPSAGAAGQQDVERLALPGLPQRLPLFPGTHLPP
YLGTAPLERDGTHNPLLPHMVLLEPPTAQSPLVAGLGALPLHAQSLVGAERVSPSMHKLR
QHRPLGRTQSAPLPQNTQALQQLVVQQQHQHFLEKQKQLHLGKMIPKPSEPARQPESHPE
ETEEELREHQALPEEPFLDRLGAHSEPHGLAGVQVKQEPIESDEEEAEPPRDAEPGQRQP
SEQELLFRQQALLLEQQRIHQLRNYQASMEAAGIPVSFGGHRPLSRAQSSPASATFPMSV
QEPPPKPRFTTGLVYDTLMLKHQCACGSSSTHPEHAGRIQSIWSRLQETGLRSKCECIRG
RKATLEELQTVHSEAHALLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWN
EVHSSGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAK
LLQQRLSVSKTLIVDWDVHHGNGTQQAFYSDPSVLYVSLHRYDDGNFFPGSGAPDEVGTG
PGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPL
GGYNLSARCFGYLTRQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEK
VLEQRPNANAVRSMEKVISIHSQYWRSLQRLSSTAGYALLEAQKCENEEAETVTAMASLS
VGVTPAEKRADEEPMEQEPPL
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgtgccggggggacccaggagcccccatcctcccgcacatcgccagctctttcctgccg
aggagaggggcgcatgctgccatgagctcgcagggccacccagacggaatctccggccga
gaccagcctgtggagctgctgagccccgcccgcgtcggccacatgcccggccctgtggat
gtggcctcggcgctgcccctgcaggtggcccccccggccgtgcccatggacctgcgcctg
gaccaccccttctcgctgcctgtggccgagcccggcctgcgggagcagcagctgcagcag
gagctcctggcgctgaagcagaagcagcagctgcagcggcagatcctcatcgccgagttc
cagcggcagcacgagcagctgtcgcggcagcatgaggcccagctgcacgagcacatcaag
caacagcaggagctgctggccctgaagcaccagcaggagctgctcgagcaccagcggaag
ctggagaggcaccggcaggagcaggagctggagaagcagcaccgtgagcagaagctgcag
cagctgaagaacaaggagaaaggcaaagagagcgccgtggccagcacggaggtgaagctg
aagctgcaggagttcgtcctgaacaagaagaaggcgctggcccagaggagcctgaaccac
tgcatcaccagcgacccgcgctactggtacgggaagacccagcacagctcgctggaccag
agctccccgccgcagagcggggcatcggcctcctaccagcacccactcctgggcatgtac
gacgccaaggatgacttcccgctgcgcaagacagcctccgagcccaacctgaagctgcgc
tcgcggctgaagcagaaggtggctgagcggcggagcagcccgctgctgcggaggaagggc
gggcccgtggtcaccgcactcaagaagcggcccctggacgtgcctgactcggcctgcagc
agcgcgcccggctcggggcccagctcccccaacaacagctcgggcaacgtcagcacggag
aacggcctcgcccccacggtgcccagcgtccccgccgaggccggcctggcacacagactg
gtggggcgcgaggccgcgccgttgcccctctacacgtcgccgtctctgcccaacatcacg
ctggggctgccggccacgggcccctcggcgggcgcggccggccagcaagacgtagagcgc
ctggccctgcctggcctgccgcagcgcctccctctcttccccggcacgcacctgcccccc
tacctgggcacggcacccctggagcgggacggcacccacaacccgctgctgccgcacatg
gtcctcctggaaccgcccaccgcccagtcgcccctggtcgccggcctgggcgcgctgccc
ctgcacgcacagtccctggtgggggccgagcgcgtgtccccgtccatgcacaagctgcgg
cagcaccggccgctggggcgcacgcagtcggcgccgctgccccagaacacgcaggccctg
cagcagctcgtggtccagcagcagcaccagcacttcctggagaagcagaagcagctgcac
ctcggcaagatgatcccgaagcccagcgagccggcccggcagcccgagagccaccccgag
gagacggaggaggagctgcgcgagcaccaggccctgcccgaggagcccttcctggaccgg
ctgggggcccactcggagccgcacggcctggccggggtgcaggtgaagcaggagcccatc
gagagcgacgaggaggaggccgagcccccgcgggacgcagagccgggccagcgccagccc
agcgagcaggagctgctcttccgacagcaagccctcctcctggagcagcagcggatccac
cagctgaggaactaccaggcctccatggaggctgccggcatccccgtgtccttcggcggc
caccggcctctgtcccgagcgcagtcttccccggcgtccgccaccttccccatgtctgtg
caggagccgcccccgaaacccaggttcaccacaggcctggtgtacgacactctcatgctg
aagcaccaatgcgcctgcggcagcagcagcacccaccccgagcatgccggccgcatccag
agcatctggtcccggctgcaggagaccggcctgcgcagcaagtgcgagtgcatccggggc
cgcaaggccacgctggaggagctgcagacggtgcactcggaggcgcacgccctgctctac
ggcaccaaccccctcaaccggcagaaactggacagtaagaaacttctaggctcgctggcc
tccgtgtttgtcaggctgccctgcggcggtgttggggtggacagtgacaccatctggaac
gaagtgcactcatccggggctgcccgtctggccgtaggctgtgtggttgagctggtcttc
aaggtggccacaggggagctgaagaatggtttcgccgtggtccgtccccctgggcatcac
gccgaggagagtacccccatgggcttctgctacttcaactccgtggccatcgcagccaag
ctactccagcagcggctgagtgtgagcaagacgctcattgtggactgggacgtgcaccat
ggcaacggcacccagcaggccttctacagcgaccccagcgtcctgtatgtgtccctgcac
cgctatgacgatggcaacttcttcccaggcagcggggcacctgacgaggtgggcacggga
ccaggcgtgggcttcaacgtcaacatggccttcaccgggggcctcgacccccccatgggc
gacgctgagtacctggcggccttcaggaccgtggtcatgcccatcgccagcgaattcgcc
ccggacgtggtgctggtgtcgtctggcttcgacgccgtggagggccaccccacgcctctg
ggcggctacaacctgtccgccagatgtttcgggtacctgacgcggcagctgatgggcttg
gccggcggccgcatcgtgctggccctggagggcggccacgacctcacggccatctgcgac
gcatcagaagcctgcgtctcggcgctgctgggcaatgagctggacccgctcccggagaag
gtcttggagcagcggcccaacgccaacgcggtgcggtccatggagaaggtcatcagcatc
cacagccagtactggcggtccctgcagcgcctgtcctccacggcgggctacgcgctgctc
gaggcgcagaagtgtgagaacgaggaggccgagacggtcacggccatggcctccctgtcc
gtgggcgtgacgcccgccgagaagagggccgacgaggagcccatggagcaggagccgccc
ctgtag
DBGET
integrated database retrieval system
