Sorex fumeus (smoky shrew): 130017828
Help
Entry
130017828 CDS
T10594
Symbol
RC3H1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
sfum Sorex fumeus (smoky shrew)
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfum03000
]
130017828 (RC3H1)
04121 Ubiquitin system [BR:
sfum04121
]
130017828 (RC3H1)
Transcription factors [BR:
sfum03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
130017828 (RC3H1)
Ubiquitin system [BR:
sfum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130017828 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
Prok-RING_4
zf-RING_2
zf-C3HC4_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
130017828
NCBI-ProteinID:
XP_055964586
LinkDB
All DBs
Position
Unknown
AA seq
1107 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IEFLPVNSALLQLVGAQVPEQQPITLCSGIEDTKHYEEARKCVEELALYLKPLSSARGVG
LNSSTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYDALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPSWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPAAALLPEE
GAVDLPGRKTPALPNGIVAAGTTVAKLIPRGTEPGYDASLKPGKMEHLSSSAPGSPPDLL
DAAPKSISALPVNPHPVPPRGPGDLPSLPVTKPPQMVSRGSPLYPAQQADVYYPDPRGTA
APPFEPAPYQPGMYYPPPPPCVSRFVRPPPTTAEPAPPYLEHYPPYLQERVVSSQYGAQP
QQYPPMYPPHYDGRRLYPPPSYGREEVFRESPVPLDIPPAAVPPYVPEPRERYPQMDAYY
PVSPHPAQLRPYVRESPYGRFPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPAFHQEEFLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDAVASGSVEM
MNVESKGMRDPRLDLQRRAAEASDDDLIPFGDRPTVSRFGAISRTSKTLYQGAPPKSLNL
PDYSPYGAHGGWGPSPYSPHPSMPSQGHFSERERISMSEVASHGKPLPSAERERLRLELQ
QLNHQISQQTQLRGLERDASALAGQPPPKWPAMVSSEQLSLELHQVEREIGKRTRELSME
NQCSLDMKSKLNTSKQAENGQPESQNKVPAEDLPLTFSDVANGSALTPENVSLLASKTSS
LALTEDPEGGGDSGDAQRPGATSSAAP
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcaagccccgcaatggacggatttcctctcctgccccatctgcacccagact
ttcgacgaaaccatccggaagcccatcagtctgggctgtggccatactgtgtgcaaaatg
tgcctgaataaactgcaccgcaaggcgtgtccatttgaccagaccactatcaacacggac
atcgagttcctccccgtgaactcagcactgctgcaactcgtcggggctcaggtccccgag
cagcagcccattactctgtgtagtgggatcgaagatacaaagcattatgaggaagcccgg
aaatgtgtggaagaattggcgttgtacctgaaaccactcagcagtgccagaggagtgggt
ctgaatagcagcactcagagcgtcctgagtcgcccgatgcagaggaagctggtgactctg
gtccactgccagctggtggaggaggaaggcaggatccgggccatgcgggccgcccggtcc
ctcggggagcggacagtcacggagctcatcctccagcaccagaacccccagcagctctcc
tccaacctgtgggccgcggtcagggccagaggctgccagtttctcggaccagcaatgcag
gaggaagctttgaagctggttctgctggcccttgaagatggctctgctttgtcaagaaaa
gttttggttctctttgtggtgcaaaggttggaaccccggtttcctcaggcctctaagacc
agcattgggcacgttgtccaactcctctacagagcctcgtgcttcaaggtcaccaagcgt
gacgaagactcttccctgatgcagctgaaggaagagtttcgaacctacgacgcgctgcgg
cgagagcacgactcgcagattgtgcagatcgccatggaagcgggtttgcgcatcgcccct
gaccagtggtcctccctcctctacggggaccagtcccacaagtctcacatgcagtccatc
atcgacaagttgcagaccccggcctccttcgcacagagcgtgcaggaactgaccattgcc
ctgcagcggactggagacccggcgaacttgaatcgcctgcgaccccacttggagcttttg
gccaacatcgaccctagtccggacgctcctcccccttcttgggagcagctggaaaacggg
ctggttgccgtgcgcaccgtggtccacgggctggtggattacatccagaaccacagcaag
aaaggagcggaccagcagcagcctccacagcacagcaagtacaagacgtacatgtgtcgg
gatatgaagcagcgaggagggtgcccccgtggggccagctgcacctttgcacactctcag
gaggagctggagaaatttcggaaaatgaacaagcgcctggtgcccagaaggcccctgagt
gcctccctaggccagctgaatgaggtgggcctccccgccgccgctctgctgcccgaggaa
ggcgccgtggacctgcccggcaggaagacccctgcgctgcccaacgggattgtggcggcg
gggaccaccgtggcgaagctgattccccgggggacggagcccggctacgacgccagcctg
aagccgggcaagatggagcatctgagcagcagcgcacccggctccccgcccgacttgctc
gatgctgccccgaagagcatttctgccttacctgtgaacccgcacccggtgcctccaagg
gggcccggagacctgccctctctgcctgtcaccaaaccaccccagatggtgtctcgaggg
tctccactctacccagcgcagcaggcggacgtgtattatccggatccccgagggacggcc
gcgcccccctttgagccagcaccgtaccagccaggcatgtactacccgccgccgccaccc
tgcgtctcccgcttcgtgcgtccgcctcccaccaccgctgagcctgcgcccccctacctg
gagcattacccgccctacctgcaagagcgcgtggtgagctcgcagtacggcgcccagccg
cagcagtacccgcccatgtacccgccgcactacgacggccgccggctctacccgcccccg
tcgtacgggcgcgaggaggtcttccgggagagccccgtgcccctcgacatcccgccggcc
gccgtcccaccctacgtgcccgagccccgggagcgctacccgcagatggacgcttactac
cccgtgtctccgcaccccgcgcagctccggccctacgtgcgggagtctccttacggccgg
tttcctccgccgccgcagccacaccccagcctggacgaactgcaccggcgccggaaggag
atcatggcccagctggaggagaggaaggtcatctccccgccgcccttcgcgccctcgccc
accctgccgcccgccttccatcaggaagagtttctggatgaagacttgaaggtggcgggc
aagtacaaggggaatgactacagccagtactcgccctggtcctgcgacaccatcggctcc
tacataggcaccaaagacgcaaagcccaaggacgcggtggcgtcggggagcgtggaaatg
atgaacgtcgagagcaaaggaatgagagacccgaggctggatcttcagagaagagccgcg
gaagccagcgatgacgacctcattccgttcggggaccggcccacagtctcgcgctttggc
gccatatcccggacgtccaaaacgctctaccagggagctcccccaaagtcgttgaacctg
ccagattacagtccgtatggagcccacggaggctgggggccgtccccatactccccacac
ccgagcatgccttctcagggacacttcagcgagagggagaggatttccatgtcggaagtg
gccagtcacgggaaacccctcccgtctgcggagagggaacgacttcgcctggaactgcag
cagctcaaccaccagatcagccaacagacccaactccgcggattggagagggatgcgagt
gccctggccggccagccaccgcccaagtggcccgcgatggtgtccagcgagcagctgagc
ctggaactgcatcaggtggagagggagatcgggaagaggacgcgggaactgagcatggag
aaccagtgttctctagacatgaaaagcaaattgaatacgagtaagcaagcggaaaacgga
cagccagaatcccaaaacaaagtgccggctgaggacctgccattgaccttcagtgatgtg
gcgaatggatcagccttgacaccggagaacgtcagcctcctggcgagcaagaccagctct
ctggccctgaccgaggaccccgagggaggcggggacagcggcgacgcccagagaccgggg
gccacgtccagtgcagctccctga
DBGET
integrated database retrieval system
