Sorex fumeus (smoky shrew): 130019107 Help Entry 130019107         CDS       T10594                                  Symbol COL4A2 Name (RefSeq) collagen alpha-2(IV) chain   KO K06237   collagen type IV alpha Organism sfum  Sorex fumeus (smoky shrew) Pathway sfum04151   PI3K-Akt signaling pathway sfum04382   Cornified envelope formation sfum04510   Focal adhesion sfum04512   ECM-receptor interaction sfum04820   Cytoskeleton in muscle cells sfum04926   Relaxin signaling pathway sfum04933   AGE-RAGE signaling pathway in diabetic complications sfum04974   Protein digestion and absorption sfum05146   Amoebiasis sfum05165   Human papillomavirus infection sfum05200   Pathways in cancer sfum05222   Small cell lung cancer Brite KEGG Orthology (KO) [BR:sfum00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     130019107 (COL4A2)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     130019107 (COL4A2)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     130019107 (COL4A2)   09142 Cell motility    04820 Cytoskeleton in muscle cells     130019107 (COL4A2)  09150 Organismal Systems   09152 Endocrine system    04926 Relaxin signaling pathway     130019107 (COL4A2)   09154 Digestive system    04974 Protein digestion and absorption     130019107 (COL4A2)   09158 Development and regeneration    04382 Cornified envelope formation     130019107 (COL4A2)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     130019107 (COL4A2)   09162 Cancer: specific types    05222 Small cell lung cancer     130019107 (COL4A2)   09172 Infectious disease: viral    05165 Human papillomavirus infection     130019107 (COL4A2)   09174 Infectious disease: parasitic    05146 Amoebiasis     130019107 (COL4A2)   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     130019107 (COL4A2)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:sfum04147]     130019107 (COL4A2)    00536 Glycosaminoglycan binding proteins [BR:sfum00536]     130019107 (COL4A2) Exosome [BR:sfum04147]  Exosomal proteins   Exosomal proteins of other cancer cells    130019107 (COL4A2) Glycosaminoglycan binding proteins [BR:sfum00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    130019107 (COL4A2) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  130019107 NCBI-ProteinID:  XP_055965659 LinkDB All DBs Position Unknown AA seq 1707 aa AA seqDB search MRRGAPARMGPPRWLLLAVTVGLLAPSVLAGVKKYDVPCGGRDCSGGCQCFPEKGGRGQP GPVGTQGYSGPPGLQGFPGLQGNKGEKGERGRPGVVGPKGEVGVRGVSGFPGADGIPGHP GQGGPRGPPGYDGCNGTHGDMGPPGPSGAGGLSGSPGPQGPKGQKGEPYALSPEERHRYR GEPGEPGLVGFQGPPGRPGPMGRMGPDGPPGRPGPPGPPGPKGQQGNRGLGFYGEKGEKG DMGLPGPNGVPSEGQPVTGPTKDTLHLEHYKGIKGSQGDRGRQGYGMKGEEGIVGFPGER GLTGYPGERGDVGLTGTRGPDGYPGPDGPPGPKGEPGVQGPPGPPGYSPYPALTKGMRGE PGFPGPHGEPGSRGQPGDPGLPGLPGTPMGTEDEKRGFPGEMGPKGFSGEPGIAARYPGP PGTDGRRGAPGLPGAAGAPGPDGFLFGLKGTEGLEGYPGPSGFPGARGQKGWKGEAGDCR CGDEFTRGPPGLPGYKGFPGTNGEPGRKGDAGEPGAHGIPGFPGFKGAPGQTGPPGPKGA KGDSRTITTKGEQGQRGVPGVPGLKGVDGFPGRDGLGGFPGLPGPPGDGIQGPPGDAGYE GLPGAKGLPGEMGPPGLGLPGPKGGRGFPGESGAPGMPGFPGPPGPPGSPGQIDCDDDGV KRPIGGQDQAPLQPGCVGGPKGYPGPPGPPGPPGIKGLPGVPGLSGADGTPGLKGLPGDP GREGFPGPPGFVGPRGSKGAMGQPGPDGLPGPSGVPGPAGPPGDRGLPGEALGAQPGPRG DAGLPGHPGLKGVPGERGPPGFTGSPGMPGMPGLKGHFGLPGPSGQPGLPGPPGQHGFPG PPGREGPLGLPGAPGFGGLPGDRGDPGDTGVPGPVGMKGISGDRGDPGALGEQGQPGSPG FKGMAGMPGTPGPKGDRGSPGMDGFQGMPGFQGRPGSPGSKGEAGFFGVPGLKGLAGEPG VKGSRGEPGPPGLPPVIVPGMKHFKGEKGDKGPMGLKGFLGLKGVIGMPGVPGLSGVPGM PGKPGYIKGAKGDIGVPGLPGSPGFPGVPGPPGIAGFPGFIGSRGEMGAPGREGLFGEAG PTGDFGDIGDTINLPGAPGLKGERGGTGTPGRKGFFGEKGAWGDIGSPGITGMTGAQGPP GQHGQTGFPGLTGLTGLQGEPGRIGVPGDKGDFGWPGAPGLPGFPGARGIGGLNGLPGTK GSPGSPGPDGHGDAGFPGPVGERGDPGEPNTLPGPPGAPGQKGERGVPGERGPAGSPGLQ GFPGVTPPSNISGAPGDVGTPGIFGMEGYQGPPGPPGPAAFPGSKGEEGLPGIPGSPGSK GWGGDPGPQGRPGVYGLPGEKGPRGEPGLMGNTGATGIVGDRGPKGPKGDRGRPGLPGSM GSPGIVGIPQRIAAQPGPMGPQGRRGPPGAQGEAGPQGPPGDPGLRGAPGKAGVQGRGGV SAMPGFRGDPGPMGNQGPIGQEGEPGRPGSPGLPGLPGRSVSIGYLLVKHSQTEQEPMCP VGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCMARFSTMPFLYCNPGDICYYASRNDKSY WLSTTAPLPMMPVAEEEIKPYISRCSVCEAPAMAIAVHSQDVSIPHCPAGWRSLWIGYSF LMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYYANKYSFWLTTIPEQSFQ ASPSPDTLKAGLIRTHISRCQVCMKNL NT seq 5124 nt NT seq  +upstreamnt  +downstreamnt atgcgccgcggagccccggcccggatgggcccgccgaggtggctgctgctggccgtgacc gtgggactgctggccccgagcgtcctggcgggtgtgaagaagtacgacgtgccgtgtggt ggcagggactgcagtggcggctgccaatgcttccccgagaaaggagggcggggccagccg ggacccgtgggcacccagggctacagcgggcccccggggctgcagggcttcccgggcctg cagggaaacaagggcgagaaaggtgagcgcggcagacccggcgtcgtgggaccaaaaggc gaagtgggcgtcagaggcgtgtccggcttccccggggccgacgggatccccgggcacccg ggccaaggcggaccccgtgggccgcccggctatgatggctgcaacggcacccatggagac atgggcccgccgggaccttctggcgctgggggcttatccggctctcccgggccccaagga ccaaaagggcagaaaggcgagccgtacgccctatctcccgaggagcgacaccgataccgg ggggagcccggcgagccgggactggtcggcttccagggtccccccggccgcccggggccc atggggcgaatggggccagacggccctccagggagaccgggcccaccgggaccccctgga cccaaagggcagcagggcaaccgcggactgggattctacggagagaaaggcgagaagggc gacatgggcctgccggggcccaacggagttccgtccgaggggcagcccgtcaccggcccc accaaggacaccctgcacctggagcactacaagggcatcaaagggagccagggggaccgc gggagacagggctacggcatgaagggggaagaaggcatcgtgggcttcccgggagagcgg ggcctgactggctaccccggagagaggggagacgtgggactgacgggaaccagaggtcct gatggctacccaggtcctgacggccctcccggacccaagggagaacccggcgtccagggc ccccccggccccccaggctactccccgtatccagccctcaccaaaggcatgagaggtgaa cccgggttcccgggaccccacggggagcccggcagccgtggccagccaggagaccccggg ctcccaggcctgccgggcacacccatgggaacggaagacgagaagaggggcttccccgga gagatggggcccaaaggcttcagcggagaacccggcatcgccgcgcggtaccccggaccc cctgggacagatggcaggcgaggagcaccaggcctccctggggccgccggggcccccgga cccgacggcttcctcttcgggctgaaagggacagagggacttgaaggctaccccggcccc tcgggcttccccggggcccgtggacagaagggatggaaaggtgaagctggggactgcagg tgtggtgacgagttcacgcggggacccccgggcctgcctggatacaaaggcttccccggc accaacggagagcccgggcgcaaaggcgacgcgggggagcccggcgcccatggcatcccc ggcttcccgggcttcaagggagcccctggccagacaggcccccctgggcccaagggcgcg aagggagactccaggaccatcaccaccaaaggtgagcagggccagcggggagtgcccggc gtgcctggcctgaagggcgtagacggcttccccggccgcgacggactcggtggattcccg ggcctgccgggccccccgggtgacggtatccagggccccccgggagacgcgggctacgag gggcttcccggcgccaagggccttcctggagagatgggccccccaggcctgggcctgcct ggccccaagggcggacgcggcttccccggagagtcaggggctcccggcatgccgggcttc cccgggcctcccggacccccaggctcgccaggacagatcgactgtgatgatgacggtgtg aaaagacccatcgggggacaggaccaggcgcccctgcagccaggctgcgtcggaggaccc aagggatacccaggacccccagggccccccggccccccaggaatcaagggcctgcccgga gtgccaggcttgtcgggggctgacggaaccccaggactcaagggtcttccaggagatccc ggccgtgaagggttcccgggacccccagggttcgtggggcctcgaggatccaaaggagcc atgggccagcccggtcccgacggcctcccagggcccagcggtgtgccaggaccagccgga ccccccggagacaggggcctgccaggagaagctctgggcgcccagcccgggcctcgagga gatgctggcctgcctggacaccccgggctgaagggcgtccctggggagagaggccctcca ggcttcacggggagcccgggcatgcccggaatgccaggactcaagggccacttcggcctg ccgggaccctcaggccagcctgggctgccgggaccaccaggccagcacggctttcccggg ccccctggccgagaggggcccttaggactgccgggtgccccgggattcggaggcctgcct ggggaccgaggagacccgggggacactggcgtgccaggccccgtaggcatgaagggcatc tctggtgacagaggggaccccggcgctctgggggagcaaggccagccgggctcgcctggc ttcaaaggcatggcagggatgccgggcacccccgggccgaaaggggaccgggggtcaccc gggatggacggcttccagggcatgcccggcttccagggccggcccggctctccaggcagc aaaggagaagccggcttcttcggggtgccggggctgaagggcctggcaggggagcccggg gtcaaaggcagcagaggagaaccagggcccccgggactgccacccgtcatcgtgccggga atgaagcacttcaagggggagaagggcgacaagggccccatggggctgaagggcttcctg ggcctgaaaggcgtcatcggcatgccaggcgtccccgggctgtcaggtgtccctggcatg ccagggaagcccggctacatcaagggcgccaagggggacatcggtgttcctggcctgccc ggctctcctggcttccccggcgttcccgggccccctggtatcgccggcttcccggggttc atcggcagcaggggtgagatgggggcccccggcagagagggcctgttcggggaggccggc cccacgggcgacttcggcgacatcggagacaccatcaacctacccggagcccccggactc aagggggaacgtggcggcacagggaccccaggccggaagggcttcttcggagagaagggc gcctggggcgacatcggctccccgggcatcaccggcatgacgggcgcccagggccccccc gggcagcatggacaaacaggatttccggggctcacggggctgacggggctgcagggagag cccggccggatcggggtgccaggagacaaaggcgatttcggctggcctggggcccccggc ttaccaggttttccgggcgcccgaggcatcgggggactcaacggcttacccggcaccaaa ggctccccaggctccccagggcccgacggccatggagacgctggcttccctgggcctgtt ggggagaggggagaccccggagagcccaacacccttcctggaccccccggagcccccggt cagaagggggagcgcggagtgccaggggaacgtggcccagcggggagcccgggactccag ggcttcccaggtgtcacccctccgtccaacatctcgggggcccctggtgacgtcgggaca cccggcatcttcggcatggaaggttatcagggccctccaggcccccctggacctgctgcc tttcctgggagcaaaggagaggagggccttcccgggatccccgggagccccggaagcaaa ggctggggcggagacccagggccgcagggccggcccggtgtgtacggcctccctggagag aaaggcccccgcggcgagccaggcttaatggggaacacaggcgccacgggcattgtgggg gaccgcggccccaagggccccaagggtgaccgcggacggcctggactacccgggtccatg gggtcccctgggattgtggggatcccccagaggatcgccgcacagccagggcccatgggt ccccagggcaggcgaggacccccaggagcacagggcgaggcagggccacaaggaccccca ggagacccagggctccgaggggctcccgggaaggccggtgttcagggccgaggcggcgtg tcagctatgccaggattccgcggtgaccccgggcccatgggcaaccagggccctatcggc caggaaggagagcccggccgccctggaagccccggcctgcctggcctgcccggccgcagc gtgagcatcggctacctgctggtgaagcacagccagacggagcaggagcccatgtgcccg gtgggcatgaacaagctgtggagcggctacagcctgctgtacttcgagggccaggagaaa gcccacaaccaggacctgggcctggccggctcctgcatggcccgcttcagcaccatgccc ttcctgtactgcaacccgggtgacatctgctactacgccagccgcaacgacaagtcctac tggctgtccaccacggccccgctgcccatgatgccggtggccgaggaagagatcaagccc tacatcagccgctgctccgtgtgcgaggccccagccatggccattgccgtgcacagccag gacgtgtccatcccgcactgcccggccggctggcgcagcctgtggatcggatactccttc ctcatgcatacagccgccggcgacgaggggggcggccagtcgctggtgtcgccgggcagc tgcctggaggacttccgtgccacgccgttcatcgagtgcaacgggggccgaggcacgtgc cactactacgccaacaagtacagcttctggctgaccaccatccccgagcagagcttccag gcctcgccgtcgccggacacgctcaaggcggggctcatccgcacacacatcagccgctgc caggtctgcatgaagaacctgtga

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